Regulog AraC - Enterobacterales
| Regulator type: | Transcription factor |
| Regulator family: | AraC |
| Regulation mode: | activator (repressor) |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Phylum: | Proteobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - AraC
- By effector - Arabinose
- By pathway - Arabinose utilization
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | 11 | 4 |
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | 12 | 5 |
| Erwinia amylovora ATCC 49946 | 6 | 2 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 6 | 2 |
| Escherichia coli str. K-12 substr. MG1655 | 11 | 4 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 13 | 6 |
| Photorhabdus luminescens subsp. laumondii TTO1 | ||
| Proteus mirabilis HI4320 | ||
| Salmonella typhimurium LT2 | 6 | 4 |
| Serratia proteamaculans 568 | 6 | 2 |
| Yersinia pestis KIM | 6 | 2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| araB |
*
Citrobacter koseri ATCC BAA-895 Site: position = -100 score = 8.12532 sequence = TAGCATTTTAATCCATA-(4)-TAGCGGATCCTGCCTGA Site: position = -174 score = 8.3147 sequence = TAACAAAAGTGTCTATA-(4)-CGACAGAAATGTCCACA Gene: CKO_03319: Ribulokinase (EC 2.7.1.16) |
|
*
Enterobacter sp. 638 Site: position = -172 score = 8.63485 sequence = TAACAAAAGTGTCTATA-(4)-CGGCAGAAATGTCCACA Site: position = -98 score = 8.10535 sequence = CAGCAATTTAATCCATA-(4)-TAGCGGATCCTGCCTGA Gene: Ent638_0610: Ribulokinase (EC 2.7.1.16) |
*
Erwinia amylovora ATCC 49946 Site: position = -99 score = 6.31618 sequence = CGACAGAAAAATACATA-(4)-TAGCCTGCTCAACCTAA Site: position = -174 score = 8.34188 sequence = CAGCTGATTTATCCATA-(4)-CAGCAAATTTAACCTTT Gene: EAM_1697: Ribulokinase (EC 2.7.1.16) |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -101 score = 6.42564 sequence = CGACAGAAAAATACATA-(4)-TAGCTAACCACTCCTAA Site: position = -176 score = 7.10563 sequence = TGACAGGTTTGTGCATA-(4)-TAGCAAATTTAACCAAT Gene: ECA2274: Ribulokinase (EC 2.7.1.16) |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -99 score = 7.98029 sequence = TAGCATTTTTATCCATA-(4)-TAGCGGATCCTACCTGA Site: position = -173 score = 8.65678 sequence = TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA Gene: b0063: Ribulokinase (EC 2.7.1.16) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -172 score = 8.65678 sequence = TAACAAAAGTGTCTATA-(4)-CGGCAGAAAAGTCCACA Site: position = -98 score = 8.46731 sequence = CAGCAAAATAATCCATA-(4)-TAGCGAATCCGGCCTGA Gene: KPN_00062: Ribulokinase (EC 2.7.1.16) |
|
|
*
Salmonella typhimurium LT2 Site: position = -173 score = 8.39881 sequence = TAACAGAAGTGTCTATA-(4)-TGGCTGGAATGTCCACA Site: position = -99 score = 8.08342 sequence = TAGCATTTTTGTCCATA-(4)-TAGCGGATCCTGCCTGA Gene: STM0103: Ribulokinase (EC 2.7.1.16) |
*
Serratia proteamaculans 568 Site: position = -100 score = 7.10382 sequence = AAGCAGAAAAGTGCATA-(4)-CAGCTAACGGCTCCTCA Site: position = -175 score = 7.52482 sequence = CAGCAGATATGTGCATA-(4)-TAGCGAATTCCGCCAAG Gene: Spro_2244: Ribulokinase (EC 2.7.1.16) |
*
Yersinia pestis KIM Site: position = -114 score = 7.50937 sequence = AAGCAGAAAAGTGCATA-(4)-CAGCTATTGGCTCCTCA Site: position = -189 score = 7.8161 sequence = CAGTTTATTTATCCATA-(4)-CAGCAAATTTAACCTCG Gene: y2095: Ribulokinase (EC 2.7.1.16) |
Ribulokinase (EC 2.7.1.16) |
| araA |
Gene: CKO_03320: L-arabinose isomerase (EC 5.3.1.4) |
|
Gene: Ent638_0609: L-arabinose isomerase (EC 5.3.1.4) |
Gene: EAM_1696: L-arabinose isomerase (EC 5.3.1.4) |
Gene: ECA2275: L-arabinose isomerase (EC 5.3.1.4) |
Gene: b0062: L-arabinose isomerase (EC 5.3.1.4) |
Gene: KPN_00061: L-arabinose isomerase (EC 5.3.1.4) |
|
|
Gene: STM0102: L-arabinose isomerase (EC 5.3.1.4) |
Gene: Spro_2243: L-arabinose isomerase (EC 5.3.1.4) |
Gene: y2094: L-arabinose isomerase (EC 5.3.1.4) |
L-arabinose isomerase (EC 5.3.1.4) |
| araD |
Gene: CKO_03321: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
|
Gene: Ent638_0608: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
|
|
Gene: b0061: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
Gene: KPN_00060: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
|
|
Gene: STM0101: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
|
|
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
| CRON 2. | |||||||||||||
| araF |
*
Citrobacter koseri ATCC BAA-895 Site: position = -210 score = 7.14451 sequence = TATGTCATTTTCCGCTG-(4)-TATGTACGCAATTACTG Site: position = -231 score = 6.27076 sequence = TCTGACAAAACCTTCTT-(4)-TATGTCATTTTCCGCTG Site: position = -284 score = 8.34719 sequence = CAAGGATTTGCTGGCTG-(4)-TATGGACTAATCTGCTA Gene: CKO_01050: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
|
*
Enterobacter sp. 638 Site: position = -208 score = 7.05695 sequence = TATGTCATTTCTCGCTG-(4)-TATGCACGCAATTACTG Site: position = -283 score = 7.55376 sequence = CAGGGACTTCTTAGCTG-(4)-TATGGATAATCTTGCTT Gene: Ent638_2476: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
*
Erwinia amylovora ATCC 49946 Site: position = -224 score = 8.34188 sequence = AAAGGTTAAATTTGCTG-(4)-TATGGATAAATCAGCTG Site: position = -299 score = 6.31618 sequence = TTAGGTTGAGCAGGCTA-(4)-TATGTATTTTTCTGTCG Gene: EAM_1698: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -310 score = 6.42564 sequence = TTAGGAGTGGTTAGCTA-(4)-TATGTATTTTTCTGTCG Site: position = -235 score = 7.10563 sequence = ATTGGTTAAATTTGCTA-(4)-TATGCACAAACCTGTCA Gene: ECA2273: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -284 score = 8.55983 sequence = CAAGGATTTCCAGGCTA-(4)-TATGGATTAATCTGCTG Site: position = -209 score = 7.605 sequence = TATGTCTTTTCCCGCTA-(4)-TATGCACGTTCTCACTG Gene: b1901: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -282 score = 8.25686 sequence = CAAGGATAAGCCTGCTG-(4)-TATAGATGATCCTGCTA Site: position = -207 score = 7.16448 sequence = TATGTCATTTTTTGCTA-(4)-TATGTACGCAATTACTG Gene: KPN_02396: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
|
|
|
*
Serratia proteamaculans 568 Site: position = -224 score = 7.52482 sequence = CTTGGCGGAATTCGCTA-(4)-TATGCACATATCTGCTG Site: position = -299 score = 7.10382 sequence = TGAGGAGCCGTTAGCTG-(4)-TATGCACTTTTCTGCTT Gene: Spro_2245: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
*
Yersinia pestis KIM Site: position = -256 score = 7.8161 sequence = CGAGGTTAAATTTGCTG-(4)-TATGGATAAATAAACTG Site: position = -331 score = 7.50937 sequence = TGAGGAGCCAATAGCTG-(4)-TATGCACTTTTCTGCTT Gene: y2096: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) |
| araG |
Gene: CKO_01051: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
|
Gene: Ent638_2475: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
Gene: EAM_1699: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
Gene: ECA2272: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
Gene: b1900: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
Gene: KPN_02395: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
|
|
|
Gene: Spro_2246: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
Gene: y2097: L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) |
| araH |
Gene: CKO_01052: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
|
Gene: Ent638_2474: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
Gene: EAM_1700: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
Gene: ECA2271: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
Gene: b4460: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
Gene: KPN_02394: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
|
|
|
Gene: Spro_2247: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
Gene: y2098: L-arabinose transport system permease protein (TC 3.A.1.2.2) |
L-arabinose transport system permease protein (TC 3.A.1.2.2) |
| araC |
*
Citrobacter koseri ATCC BAA-895 Site: position = -204 score = 8.3147 sequence = TGTGGACATTTCTGTCG-(4)-TATAGACACTTTTGTTA Site: position = -278 score = 8.12532 sequence = TCAGGCAGGATCCGCTA-(4)-TATGGATTAAAATGCTA Gene: CKO_03318: Arabinose operon regulatory protein, AraC family |
|
*
Enterobacter sp. 638 Site: position = -276 score = 8.10535 sequence = TCAGGCAGGATCCGCTA-(4)-TATGGATTAAATTGCTG Site: position = -202 score = 8.63485 sequence = TGTGGACATTTCTGCCG-(4)-TATAGACACTTTTGTTA Gene: Ent638_0611: Arabinose operon regulatory protein, AraC family |
Gene: EAM_1701: Arabinose operon regulatory protein, AraC family |
Gene: ECA2270: Arabinose operon regulatory protein, AraC family |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -277 score = 7.98029 sequence = TCAGGTAGGATCCGCTA-(4)-TATGGATAAAAATGCTA Site: position = -203 score = 8.65678 sequence = TGTGGACTTTTCTGCCG-(4)-TATAGACACTTTTGTTA Gene: b0064: Arabinose operon regulatory protein, AraC family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -203 score = 8.65678 sequence = TGTGGACTTTTCTGCCG-(4)-TATAGACACTTTTGTTA Site: position = -277 score = 8.46731 sequence = TCAGGCCGGATTCGCTA-(4)-TATGGATTATTTTGCTG Gene: KPN_00063: Arabinose operon regulatory protein, AraC family |
|
|
*
Salmonella typhimurium LT2 Site: position = -205 score = 8.39881 sequence = TGTGGACATTCCAGCCA-(4)-TATAGACACTTCTGTTA Site: position = -279 score = 8.08342 sequence = TCAGGCAGGATCCGCTA-(4)-TATGGACAAAAATGCTA Gene: STM0104: Arabinose operon regulatory protein, AraC family |
Gene: Spro_2248: Arabinose operon regulatory protein, AraC family |
Gene: y2100: Arabinose operon regulatory protein, AraC family |
Arabinose operon regulatory protein, AraC family |
| CRON 3. | |||||||||||||
| araE |
|
|
*
Enterobacter sp. 638 Site: position = -179 score = 4.59005 sequence = TATAAATTAAGTATTTA-(4)-TAAATGATGATTATTCA Site: position = -158 score = 4.82099 sequence = TAAATGATGATTATTCA-(4)-AAGTTTAAATTGGAATA Gene: Ent638_3294: Low-affinity L-arabinose transport system proton symport protein |
|
|
Gene: b2841: Low-affinity L-arabinose transport system proton symport protein |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -159 score = 7.51733 sequence = CAGCAATATAGTCCATA-(4)-TGGCTTATCCTGCCTGA Site: position = -73 score = 4.93023 sequence = TGGCAGGAAAAAAATGA-(4)-AATCAGTAACGACTCTA Gene: KPN_03264: Low-affinity L-arabinose transport system proton symport protein |
|
|
*
Salmonella typhimurium LT2 Site: position = -99 score = 6.89157 sequence = TAGCCATTTAATCCATA-(4)-TGCCGTTTCCAGCCTGA Gene: STM3016: Low-affinity L-arabinose transport system proton symport protein |
|
|
Low-affinity L-arabinose transport system proton symport protein |
| CRON 4. | |||||||||||||
| araJ |
|
|
Gene: Ent638_2050: Protein AraJ precursor |
|
|
Gene: b0396: Protein AraJ precursor |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -310 score = 4.38617 sequence = GGACGGTAAAGGCGACA-(4)-TAAAACCGACATCAACA Gene: KPN_01860: Protein AraJ precursor |
|
|
*
Salmonella typhimurium LT2 Site: position = -134 score = 7.05818 sequence = TAGCATAATAATGAATA-(4)-AAGACGGATAAGGAATG Gene: STM0394: Protein AraJ precursor |
|
|
Protein AraJ precursor |
| CRON 5. | |||||||||||||
| ytfQ |
*
Citrobacter koseri ATCC BAA-895 Site: position = -189 score = 7.4612 sequence = TGACAGGAAAATCCATA-(4)-CAGCTGCTTTTTTCATA Gene: CKO_03603: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
|
*
Enterobacter sp. 638 Site: position = -189 score = 7.33212 sequence = TGACAGGAAAATCCATA-(4)-TAGCCACATATTCAATG Gene: Ent638_0412: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
|
Gene: ECA4236: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -188 score = 7.75908 sequence = GAGCAGGAAAATCCATA-(4)-TAGCCGCATTTTTCATA Gene: b4227: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -324 score = 7.40882 sequence = TGACATGAAAATCCATA-(4)-TAGCCACATCATGAATA Gene: KPN_04622: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
|
|
|
Gene: Spro_4768: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
Gene: y0328: Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
Galactose/arabinose ABC transport system, periplasmic binding protein YtfQ precursor |
| ytfR |
Gene: CKO_03602: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
|
Gene: Ent638_0413: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
|
Gene: ECA4235: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
Gene: b4485: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
Gene: KPN_04623: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
|
|
|
Gene: Spro_4767: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
Gene: y0329: Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
Galactose/arabinose ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17) |
| ytfT |
Gene: CKO_03601: Galactose/arabinose ABC transport system, permease protein YtfT |
|
Gene: Ent638_0414: Galactose/arabinose ABC transport system, permease protein YtfT |
|
Gene: ECA4234: Galactose/arabinose ABC transport system, permease protein YtfT |
Gene: b4230: Galactose/arabinose ABC transport system, permease protein YtfT |
Gene: KPN_04624: Galactose/arabinose ABC transport system, permease protein YtfT |
|
|
|
Gene: Spro_4766: Galactose/arabinose ABC transport system, permease protein YtfT |
Gene: y0330: Galactose/arabinose ABC transport system, permease protein YtfT |
Galactose/arabinose ABC transport system, permease protein YtfT |
| yjfF |
Gene: CKO_03600: Galactose/arabinose ABC transport system, permease protein YjfF |
|
Gene: Ent638_0415: Galactose/arabinose ABC transport system, permease protein YjfF |
|
Gene: ECA4233: Galactose/arabinose ABC transport system, permease protein YjfF |
Gene: b4231: Galactose/arabinose ABC transport system, permease protein YjfF |
Gene: KPN_04625: Galactose/arabinose ABC transport system, permease protein YjfF |
|
|
|
Gene: Spro_4765: Galactose/arabinose ABC transport system, permease protein YjfF |
Gene: y0331: Galactose/arabinose ABC transport system, permease protein YjfF |
Galactose/arabinose ABC transport system, permease protein YjfF |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |