Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Citrobacter koseri ATCC BAA-895

Properties
Regulator type: Transcription factor
TF locus tag: CKO_01146
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Enterobacteriales
Statistics of regulated genes:
- Genes 19
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 159 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -87
Score: 5.3
Sequence: TAATGGAACGATGTTTTAATA
Locus tag: CKO_04968
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
CKO_04968
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Position: -107
Score: 5.5
Sequence: TATAAAAATAGCGTTTCATTT
Locus tag: CKO_01727
Name: ppsR
Funciton: PEP synthetase regulatory protein
CKO_01727
ppsR
PEP synthetase regulatory protein
Position: -7
Score: 4.9
Sequence: ATTTGAAATGAGGTTTCAACT
Locus tag: CKO_00837
Name: yeeO
Funciton: predicted multidrug efflux system, MATE family
CKO_00837
yeeO
predicted multidrug efflux system, MATE family
Position: -31
Score: 5.2
Sequence: AAATAAAACATTATTTCAAAG
Locus tag: CKO_03627
Name: kdgX
Funciton: predicted 2-keto-3-deoxygluconate permease
CKO_03627
kdgX
predicted 2-keto-3-deoxygluconate permease
Position: -190
Score: 5.4
Sequence: AATAGAAACGCTGTTTTATAA
Locus tag: CKO_01081
Name: rhiT
Funciton: Rhamnogalacturonide transporter
Locus tag: CKO_01082
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
CKO_01081
rhiT
Rhamnogalacturonide transporter
CKO_01082
rhiN
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Position: -33
Score: 6.2
Sequence: AAATGAAACGTTGTTTTATTT
Locus tag: CKO_03553
Name: yjgK
Funciton: cytoplasmic protein involved in polygalacturonate utilization
CKO_03553
yjgK
cytoplasmic protein involved in polygalacturonate utilization
Position: -121
Score: 5.1
Sequence: AACAGAAACGTTGTTTCATTC
Locus tag: CKO_03830
Name: yjcB
Funciton: putative inner membrane protein
CKO_03830
yjcB
putative inner membrane protein
Position: -231
Score: 5.7
Sequence: AACTAAAACAGTGTTTTATTT
Locus tag: CKO_03757
Name: kdgT
Funciton: 2-keto-3-deoxygluconate permease
CKO_03757
kdgT
2-keto-3-deoxygluconate permease
Position: -138
Score: 5.1
Sequence: TTTTAAACCATCGTTTCAATT
Position: -50
Score: 4.8
Sequence: AACTAAAACAATGTTTTAACG
Locus tag: CKO_04899
Name: rhiA
Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
CKO_04899
rhiA
predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Position: -99
Score: 5.9
Sequence: TTATAAAACACTGTTTCATTT
Locus tag: CKO_01753
Name: kduD2
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
CKO_01753
kduD2
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -286
Score: 5
Sequence: TTTTGAAACGCTGTTTTCATT
Locus tag: CKO_01709
Name: pykF
Funciton: Pyruvate kinase (EC 2.7.1.40)
CKO_01709
pykF
Pyruvate kinase (EC 2.7.1.40)
Position: -38
Score: 5.6
Sequence: AGTTGAAACATTGTTTCAATA
Locus tag: CKO_04218
Name: kdgF
Funciton: Pectin degradation protein KdgF
CKO_04218
kdgF
Pectin degradation protein KdgF
Position: -147
Score: 5.6
Sequence: AAATGAAACATAGTTTTGTTA
Locus tag: CKO_03092
Name: kdgT
Funciton: 2-keto-3-deoxygluconate permease
CKO_03092
kdgT
2-keto-3-deoxygluconate permease
Position: -119
Score: 6.2
Sequence: AAATGAAACAACGTTTTATTT
Position: -51
Score: 4.4
Sequence: AAACGGAACGGTGTTTCGCCT
Locus tag: CKO_04220
Name: kduI
Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: CKO_04219
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
CKO_04220
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
CKO_04219
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -249
Score: 5.5
Sequence: AAATGAAACGCTATTTTTATA
Locus tag: CKO_01725
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
CKO_01725
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -199
Score: 5.4
Sequence: TTTTGAAATGATGTTTCATAT
Locus tag: CKO_01049
Name: tpfX
Funciton: ThiJ/PfpI-family hypothetical protein
CKO_01049
tpfX
ThiJ/PfpI-family hypothetical protein
Position: -360
Score: 4.5
Sequence: TATTGGACCGTTGTTTCAAAA
Locus tag: CKO_01116
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
CKO_01116
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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