Regulog KdgR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - KdgR
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Pectin and polygalacturonate utlization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 11 | 10 |
| Salmonella typhimurium LT2 | 15 | 12 |
| Citrobacter koseri ATCC BAA-895 | 19 | 17 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 22 | 18 |
| Enterobacter sp. 638 | 30 | 21 |
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | 19 | 14 |
| Serratia proteamaculans 568 | 5 | 5 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 42 | 31 |
| Edwardsiella tarda EIB202 | 8 | 5 |
| Proteus mirabilis HI4320 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| kdgK |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -86 score = 5.32094 sequence = TAATGGAACACTGTTTTAATA Gene: b3526: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Salmonella typhimurium LT2 Site: position = -85 score = 4.85834 sequence = TAATGGACCGATGTTTTAATA Gene: STM3612: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -87 score = 5.33122 sequence = TAATGGAACGATGTTTTAATA Gene: CKO_04968: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -87 score = 5.33122 sequence = TAATGGAACGATGTTTTAATA Gene: KPN_03876: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Enterobacter sp. 638 Site: position = -84 score = 5.08668 sequence = TTATGGAACGACGTTTTAATA Gene: Ent638_3923: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
|
*
Yersinia pestis KIM Site: position = -225 score = 5.08791 sequence = ATTTAAAACACCGTTTTAATC Gene: y3838: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Serratia proteamaculans 568 Site: position = -105 score = 6.17307 sequence = AAATAAAACGTTGTTTTATTT Gene: Spro_4750: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -125 score = 5.37161 sequence = AAATAAAACATCGTTTCAAGA Gene: ECA4360: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
*
Edwardsiella tarda EIB202 Site: position = -91 score = 5.37252 sequence = AAACAGAACGTTGTTTTATTT Gene: ETAE_3377: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
|
|
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| CRON 2. | |||||||||||||
| ppsR |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -131 score = 5.25789 sequence = AAATGAAATGCTGTTTTCATA Gene: b1703: PEP synthetase regulatory protein |
*
Salmonella typhimurium LT2 Site: position = -131 score = 4.85744 sequence = AAATGAAACACACTTTTCATT Gene: STM1348: PEP synthetase regulatory protein |
*
Citrobacter koseri ATCC BAA-895 Site: position = -107 score = 5.46645 sequence = TATAAAAATAGCGTTTCATTT Gene: CKO_01727: PEP synthetase regulatory protein |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -97 score = 5.12755 sequence = AACAAAAATAGCGTTTCAATT Gene: KPN_02161: PEP synthetase regulatory protein |
*
Enterobacter sp. 638 Site: position = -107 score = 5.33969 sequence = ATTAAAAACACCATTTCATTT Gene: Ent638_1744: PEP synthetase regulatory protein |
Gene: EAM_1645: PEP synthetase regulatory protein |
Gene: y1929: PEP synthetase regulatory protein |
*
Serratia proteamaculans 568 Site: position = -134 score = 5.16114 sequence = ATTTGAAATAGTGTTTTACTT Gene: Spro_2173: PEP synthetase regulatory protein |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -94 score = 5.63269 sequence = TAATGAAATGGCGTTTTAATA Gene: ECA1852: PEP synthetase regulatory protein |
Gene: ETAE_1791: PEP synthetase regulatory protein |
Gene: PMI1422: PEP synthetase regulatory protein |
Gene: plu2629: PEP synthetase regulatory protein |
PEP synthetase regulatory protein |
| CRON 3. | |||||||||||||
| kduI |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -63 score = 5.4325 sequence = AAACGAAACAGTGTTTCACTA Site: position = -130 score = 6.25775 sequence = AAATGAAACATTGTTTTATTT Gene: b2843: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Salmonella typhimurium LT2 Site: position = -58 score = 5.26534 sequence = AATCAAAACAGTGTTTTGATT Site: position = -123 score = 6.231 sequence = AAATGAAACGTTGTTTTATTT Gene: STM3018: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -51 score = 4.39485 sequence = AAACGGAACGGTGTTTCGCCT Site: position = -119 score = 6.231 sequence = AAATGAAACAACGTTTTATTT Gene: CKO_04220: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
|
*
Enterobacter sp. 638 Site: position = -60 score = 4.97537 sequence = AATCGGAACATTGTTTCGTTA Site: position = -127 score = 5.40034 sequence = AACTGAAACAACGTTTTAAAT Gene: Ent638_3296: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
|
*
Yersinia pestis KIM Site: position = -201 score = 5.97045 sequence = TAATAAAACATCATTTCATTT Gene: y1887: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -209 score = 6.08823 sequence = AAATAAAACATTATTTCATTT Gene: ECA2400: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
*
Edwardsiella tarda EIB202 Site: position = -129 score = 5.57573 sequence = AATCAAAACAGCATTTCATTT Gene: ETAE_1898: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
Gene: PMI2133: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
|
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
| kduD |
Gene: b2842: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: STM3017: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: CKO_04219: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -139 score = 5.15902 sequence = AAACGGAACTCTGTTTTATTT Site: position = -207 score = 5.83027 sequence = AAATGAAACATCGTTTTAAAT Gene: KPN_03265: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: Ent638_3295: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
|
Gene: y1886: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
|
Gene: ECA2401: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: ETAE_1899: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
Gene: PMI2132: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
|
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
| CRON 4. | |||||||||||||
| kdgF |
|
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -38 score = 5.55738 sequence = AGTTGAAACATTGTTTCAATA Gene: CKO_04218: Pectin degradation protein KdgF |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -39 score = 5.82635 sequence = AAATGAAACAATGTTTCACTT Gene: KPN_03255: Pectin degradation protein KdgF |
*
Enterobacter sp. 638 Site: position = -38 score = 5.49445 sequence = AATTAAAACAATGTTTCACTA Gene: Ent638_3287: Pectin degradation protein KdgF |
|
*
Yersinia pestis KIM Site: position = -155 score = 5.97045 sequence = AAATGAAATGATGTTTTATTA Gene: y1888: Pectin degradation protein KdgF |
Gene: Spro_2188: Pectin degradation protein KdgF |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -174 score = 6.08823 sequence = AAATGAAATAATGTTTTATTT Gene: ECA2399: Pectin degradation protein KdgF |
|
|
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Pectin degradation protein KdgF |
| CRON 5. | |||||||||||||
| yjcB |
Gene: b4060: putative inner membrane protein |
*
Salmonella typhimurium LT2 Site: position = -120 score = 5.38426 sequence = AATAGAAACAATGTTTCATTC Gene: STM4263: putative inner membrane protein |
*
Citrobacter koseri ATCC BAA-895 Site: position = -121 score = 5.11052 sequence = AACAGAAACGTTGTTTCATTC Gene: CKO_03830: putative inner membrane protein |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -113 score = 4.94925 sequence = AACAGAAATGGCGTTTCATCA Gene: KPN_04460: putative inner membrane protein |
Gene: Ent638_0263: putative inner membrane protein |
|
|
Gene: Spro_2355: putative inner membrane protein |
|
|
|
|
putative inner membrane protein |
| CRON 6. | |||||||||||||
| yjgK |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -35 score = 6.04806 sequence = AAATGAAACGTTGTTTTAATT Gene: b4252: cytoplasmic protein involved in polygalacturonate utilization |
*
Salmonella typhimurium LT2 Site: position = -32 score = 5.65171 sequence = AAATAAAACGCTGTTTTAACT Gene: STM4468: cytoplasmic protein involved in polygalacturonate utilization |
*
Citrobacter koseri ATCC BAA-895 Site: position = -33 score = 6.231 sequence = AAATGAAACGTTGTTTTATTT Gene: CKO_03553: cytoplasmic protein involved in polygalacturonate utilization |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -33 score = 5.80666 sequence = AAATGAAATGCTGTTTTATAT Gene: KPN_04658: cytoplasmic protein involved in polygalacturonate utilization |
*
Enterobacter sp. 638 Site: position = -34 score = 6.03996 sequence = AAATGAAACATTGTTTTATAT Gene: Ent638_0453: cytoplasmic protein involved in polygalacturonate utilization |
|
*
Yersinia pestis KIM Site: position = -41 score = 5.93342 sequence = TAATAAAACAGCATTTCATTT Gene: y0739: cytoplasmic protein involved in polygalacturonate utilization |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -41 score = 5.05657 sequence = TTGTAAAACAGGGTTTCATTT Gene: ECA0383: cytoplasmic protein involved in polygalacturonate utilization |
*
Edwardsiella tarda EIB202 Site: position = -39 score = 5.56606 sequence = AAATAAAACGCAGTTTTATAA Gene: ETAE_3112: cytoplasmic protein involved in polygalacturonate utilization |
|
|
cytoplasmic protein involved in polygalacturonate utilization |
| CRON 7. | |||||||||||||
| kduD2 |
|
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -99 score = 5.91189 sequence = TTATAAAACACTGTTTCATTT Gene: CKO_01753: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -104 score = 5.80902 sequence = AATCAAAACATTGTTTCATTT Gene: KPN_01240: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
*
Enterobacter sp. 638 Site: position = -94 score = 5.56972 sequence = TTTTAAAACATCATTTCATTT Gene: Ent638_1716: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
|
|
|
|
|
|
|
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
| CRON 8. | |||||||||||||
| ygjV |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -64 score = 5.35657 sequence = ATAAAAAACGGCGTTTCATAA Gene: b3090: putative transport protein |
|
|
Gene: KPN_03518: putative transport protein |
|
|
*
Yersinia pestis KIM Site: position = -133 score = 5.17562 sequence = ATATGAAACGGTGTTCTGTTT Gene: y3597: putative transport protein |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -70 score = 6.16722 sequence = AAATAAAACGGCGTTTCATTT Gene: ECA0648: putative transport protein |
Gene: ETAE_0439: putative transport protein |
|
|
putative transport protein |
| CRON 9. | |||||||||||||
| rhiT |
|
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -190 score = 5.41818 sequence = AATAGAAACGCTGTTTTATAA Gene: CKO_01081: Rhamnogalacturonide transporter |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -200 score = 4.94227 sequence = AAGAGAAATGCTGTTTTATAA Gene: KPN_02390: Rhamnogalacturonide transporter |
*
Enterobacter sp. 638 Site: position = -189 score = 5.60112 sequence = AAAAGAAACGCTGTTTTATAA Gene: Ent638_2444: Rhamnogalacturonide transporter |
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -167 score = 4.66061 sequence = AGTTAAAATGCCTTTTTATAA Gene: ECA3560: Rhamnogalacturonide transporter |
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|
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Rhamnogalacturonide transporter |
| rhiN |
|
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Gene: CKO_01082: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Gene: KPN_02389: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Gene: Ent638_2443: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: ECA3559: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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|
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| CRON 10. | |||||||||||||
| togM |
|
|
|
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -211 score = 5.64427 sequence = AATTAAAACGGTGTTTTATAA Site: position = -288 score = 5.04706 sequence = TTTTGAAACATCGTTTCGACT Gene: KPN_03256: oligogalacturonide ABC transporter, inner membrane permease |
*
Enterobacter sp. 638 Site: position = -226 score = 5.12819 sequence = AATTAAAACGCCGTTTTACAA Gene: Ent638_3289: oligogalacturonide ABC transporter, inner membrane permease |
|
Gene: y1884: oligogalacturonide ABC transporter, inner membrane permease |
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Gene: ECA2403: oligogalacturonide ABC transporter, inner membrane permease |
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oligogalacturonide ABC transporter, inner membrane permease |
| togN |
|
|
|
Gene: KPN_03257: oligogalacturonide ABC transporter, inner membrane permease |
Gene: Ent638_3290: oligogalacturonide ABC transporter, inner membrane permease |
|
Gene: y1883: oligogalacturonide ABC transporter, inner membrane permease |
|
Gene: ECA2404: oligogalacturonide ABC transporter, inner membrane permease |
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|
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oligogalacturonide ABC transporter, inner membrane permease |
| togA |
|
|
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Gene: KPN_03258: oligogalacturonide ABC transporter, ATP-binding component |
Gene: Ent638_3291: oligogalacturonide ABC transporter, ATP-binding component |
|
Gene: y1882: oligogalacturonide ABC transporter, ATP-binding component |
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Gene: ECA2405: oligogalacturonide ABC transporter, ATP-binding component |
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oligogalacturonide ABC transporter, ATP-binding component |
| togB |
|
|
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Gene: KPN_03259: oligogalacturonide ABC transporter, solute-binding periplasmic protein |
Gene: Ent638_3292: oligogalacturonide ABC transporter, solute-binding periplasmic protein |
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Gene: y1881: oligogalacturonide ABC transporter, solute-binding periplasmic protein |
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Gene: ECA2406: oligogalacturonide ABC transporter, solute-binding periplasmic protein |
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|
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oligogalacturonide ABC transporter, solute-binding periplasmic protein |
| ogl |
|
|
|
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -299 score = 5.83027 sequence = ATTTAAAACGATGTTTCATTT Site: position = -103 score = 5.62695 sequence = TAATGAAACAATGTTTTGATA Gene: KPN_03266: Oligogalacturonate lyase (EC 4.2.2.6) |
*2
Enterobacter sp. 638 Site: position = -105 score = 5.0171 sequence = CATTGAAACGTCGTTTTGATA Gene: Ent638_3297: Oligogalacturonate lyase (EC 4.2.2.6) Gene: Ent638_3293: Oligogalacturonate lyase (EC 4.2.2.6) |
|
*
Yersinia pestis KIM Site: position = -96 score = 5.75768 sequence = AAATGAAACATTGTTTCTATA Gene: y1875: Oligogalacturonate lyase (EC 4.2.2.6) |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -180 score = 5.75768 sequence = AAATGAAACATTGTTTCTATA Gene: ECA2426: Oligogalacturonate lyase (EC 4.2.2.6) |
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|
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Oligogalacturonate lyase (EC 4.2.2.6) |
| pelW |
|
|
|
|
|
|
*
Yersinia pestis KIM Site: position = -76 score = 5.17457 sequence = GATTGAAACGATGTTTCTATT Site: position = -152 score = 4.4974 sequence = AATCAAAACAACGTTCCGACT Gene: y1885: Exopolygalacturonate lyase (EC 4.2.2.9) |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -61 score = 5.30503 sequence = AATCAAAACAGTGTTTCTATT Site: position = -139 score = 4.4974 sequence = AATCAAAACAACGTTCCGACT Gene: ECA2402: Exopolygalacturonate lyase (EC 4.2.2.9) |
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Exopolygalacturonate lyase (EC 4.2.2.9) |
| CRON 11. | |||||||||||||
| kdgX |
|
*
Salmonella typhimurium LT2 Site: position = -34 score = 5.84736 sequence = AAATAAAACATTATTTTAATT Gene: STM4395: predicted 2-keto-3-deoxygluconate permease |
*
Citrobacter koseri ATCC BAA-895 Site: position = -31 score = 5.22305 sequence = AAATAAAACATTATTTCAAAG Gene: CKO_03627: predicted 2-keto-3-deoxygluconate permease |
|
*
Enterobacter sp. 638 Site: position = -33 score = 5.85179 sequence = AATTGAAACGTCATTTTATTT Gene: Ent638_0375: predicted 2-keto-3-deoxygluconate permease |
|
*
Yersinia pestis KIM Site: position = -22 score = 5.76259 sequence = TAACGAAACATCATTTCATTT Gene: y1734: predicted 2-keto-3-deoxygluconate permease |
Gene: Spro_3396: predicted 2-keto-3-deoxygluconate permease |
Gene: ECA1684: predicted 2-keto-3-deoxygluconate permease |
|
|
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predicted 2-keto-3-deoxygluconate permease |
| CRON 12. | |||||||||||||
| togT |
|
|
|
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -46 score = 5.17095 sequence = TATAAAAACAGTGTTTCAAAA Gene: KPN_02398: Oligogalacturonide transporter |
|
|
*
Yersinia pestis KIM Site: position = -25 score = 6.07481 sequence = AAATGAAACATTGTTTTAATT Site: position = -47 score = 4.52273 sequence = AAAGAAAACAGTTATTCATTA Gene: y2961: Oligogalacturonide transporter |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -38 score = 5.49844 sequence = AACTGAAATATTGTTTCATAT Site: position = -60 score = 4.45456 sequence = TAAAGAAATGATAGTTCAATC Gene: ECA0817: Oligogalacturonide transporter |
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|
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Oligogalacturonide transporter |
| CRON 13. | |||||||||||||
| ppsA |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -222 score = 5.25789 sequence = TATGAAAACAGCATTTCATTT Gene: b1702: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Salmonella typhimurium LT2 Site: position = -226 score = 4.85744 sequence = AATGAAAAGTGTGTTTCATTT Gene: STM1349: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -249 score = 5.46645 sequence = AAATGAAACGCTATTTTTATA Gene: CKO_01725: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -254 score = 5.12755 sequence = AATTGAAACGCTATTTTTGTT Gene: KPN_02160: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Enterobacter sp. 638 Site: position = -249 score = 5.33969 sequence = AAATGAAATGGTGTTTTTAAT Gene: Ent638_1745: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
Gene: EAM_1646: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
Gene: y1930: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Serratia proteamaculans 568 Site: position = -364 score = 5.16114 sequence = AAgTaAAACAcTaTTTCAaaT Gene: Spro_2174: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -227 score = 5.63269 sequence = TATTAAAACGCCATTTCATTA Gene: ECA1853: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
Gene: ETAE_1789: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
Gene: PMI1421: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
Gene: plu2628: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
Phosphoenolpyruvate synthase (EC 2.7.9.2) |
| CRON 14. | |||||||||||||
| yeeO |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -7 score = 4.86337 sequence = ATTTGAAATGTGGTTTCACTT Gene: b1985: predicted multidrug efflux system, MATE family |
*
Salmonella typhimurium LT2 Site: position = -7 score = 4.99513 sequence = TATTGAAATGTGGTTTCAACT Gene: STM2013: predicted multidrug efflux system, MATE family |
*
Citrobacter koseri ATCC BAA-895 Site: position = -7 score = 4.86837 sequence = ATTTGAAATGAGGTTTCAACT Gene: CKO_00837: predicted multidrug efflux system, MATE family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -40 score = 5.14332 sequence = ATTTGAAATGTTGTTTCAACA Gene: KPN_02447: predicted multidrug efflux system, MATE family |
*
Enterobacter sp. 638 Site: position = -74 score = 4.97321 sequence = ATTTGAAATGTAGTTTCAACT Gene: Ent638_2574: predicted multidrug efflux system, MATE family |
Gene: EAM_2133: predicted multidrug efflux system, MATE family |
*
Yersinia pestis KIM Site: position = -158 score = 4.84332 sequence = TCATGAAACTATGTTCCATTT Gene: y2593: predicted multidrug efflux system, MATE family |
*
Serratia proteamaculans 568 Site: position = -39 score = 5.22936 sequence = ATTTGAAATGTTGTTTCACTT Gene: Spro_3106: predicted multidrug efflux system, MATE family |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -140 score = 5.076 sequence = AATAGAAACGTCATTTTAAAA Gene: ECA2762: predicted multidrug efflux system, MATE family |
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predicted multidrug efflux system, MATE family |
| CRON 15. | |||||||||||||
| sghX |
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Gene: y3835: putative exported protein |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -76 score = 4.01687 sequence = TATCACAATAAGGTTCCATTT Site: position = -98 score = 5.58098 sequence = AAATAAAACCTCGTTTCTTTT Gene: ECA0732: putative exported protein |
|
|
|
putative exported protein |
| CRON 16. | |||||||||||||
| pehN |
|
|
|
|
Gene: Ent638_2115: putative polygalacturonase |
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -37 score = 5.69647 sequence = TATTAAAACGATATTTCATTA Gene: ECA1190: putative polygalacturonase |
|
|
|
putative polygalacturonase |
| CRON 17. | |||||||||||||
| rhiA |
|
*
Salmonella typhimurium LT2 Site: position = -126 score = 4.71378 sequence = ATGTGAAACAGGGTTTCAAAA Gene: STM4054: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
*
Citrobacter koseri ATCC BAA-895 Site: position = -138 score = 5.08341 sequence = TTTTAAACCATCGTTTCAATT Site: position = -50 score = 4.82111 sequence = AACTAAAACAATGTTTTAACG Gene: CKO_04899: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
|
*
Enterobacter sp. 638 Site: position = -134 score = 4.5088 sequence = TTTCAAACCATCGTTTCAAAA Site: position = -49 score = 4.79435 sequence = AACTAAAACAACGTTTTAACG Gene: Ent638_3876: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
|
Gene: y2585: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -239 score = 5.58887 sequence = ATATAAAACAGCATTTCATAT Gene: ECA0357: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
|
|
|
predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit |
| rhiB |
|
Gene: STM4053: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
Gene: CKO_03566: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
|
Gene: Ent638_3875: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
|
Gene: y2586: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
|
Gene: ECA0356: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
|
|
|
predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit |
| rhiC |
|
Gene: STM4052: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
Gene: CKO_03565: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
|
Gene: Ent638_3874: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
|
Gene: y2587: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
|
Gene: ECA0355: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
|
|
|
predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
| CRON 18. | |||||||||||||
| paeY |
|
|
|
|
|
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -213 score = 5.12866 sequence = TATTAAAATAACATTTCACTT Gene: ECA3252: pectin acetylesterase |
|
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|
pectin acetylesterase |
| pemA |
|
|
|
|
|
|
*
Yersinia pestis KIM Site: position = -149 score = 5.28647 sequence = AAATGGAATTGCGTTTCATTT Gene: y3757: Putative pectinesterase (EC 3.1.1.11) |
|
Gene: ECA3253: Putative pectinesterase (EC 3.1.1.11) |
|
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|
Putative pectinesterase (EC 3.1.1.11) |
| CRON 19. | |||||||||||||
| spiX |
|
|
|
|
|
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -54 score = 5.11535 sequence = AATTGAAATACAGTTTTAAAA Gene: ECA1742: predicted 5-keto-4-deoxyuronate isomerase |
|
|
|
predicted 5-keto-4-deoxyuronate isomerase |
| CRON 20. | |||||||||||||
| pykF |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -286 score = 4.98824 sequence = TTTTGAAACGCTGTTTTTGTT Gene: b1676: Pyruvate kinase (EC 2.7.1.40) |
*
Salmonella typhimurium LT2 Site: position = -286 score = 4.68744 sequence = TTTTGAAACAGGGTTTTCATT Gene: STM1378: Pyruvate kinase (EC 2.7.1.40) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -286 score = 5.02668 sequence = TTTTGAAACGCTGTTTTCATT Gene: CKO_01709: Pyruvate kinase (EC 2.7.1.40) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -285 score = 4.99732 sequence = ATTTGAAACGAGGTTTTTATT Gene: KPN_02133: Pyruvate kinase (EC 2.7.1.40) |
*
Enterobacter sp. 638 Site: position = -286 score = 5.05786 sequence = TTTTGAAACGCCGTTTCCATT Gene: Ent638_1768: Pyruvate kinase (EC 2.7.1.40) |
Gene: EAM_1657: Pyruvate kinase (EC 2.7.1.40) |
Gene: y1944: Pyruvate kinase (EC 2.7.1.40) |
*
Serratia proteamaculans 568 Site: position = -203 score = 4.07437 sequence = AAtaacAACAcatTTTCATcT Gene: Spro_2187: Pyruvate kinase (EC 2.7.1.40) |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -259 score = 5.0609 sequence = ATACGGAACGTCGTTTCAATT Gene: ECA1867: Pyruvate kinase (EC 2.7.1.40) |
Gene: ETAE_1850: Pyruvate kinase (EC 2.7.1.40) |
Gene: PMI1405: Pyruvate kinase (EC 2.7.1.40) |
Gene: plu2613: Pyruvate kinase (EC 2.7.1.40) |
Pyruvate kinase (EC 2.7.1.40) |
| CRON 21. | |||||||||||||
| sotA |
|
|
|
|
|
|
|
Gene: Spro_3234: sugar efflux transporter |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -88 score = 4.97518 sequence = TAATGAAACAAGATTTCTGTT Gene: ECA2730: sugar efflux transporter |
|
|
|
sugar efflux transporter |
| CRON 22. | |||||||||||||
| pehA |
|
|
|
|
|
Gene: EAM_2105: Polygalacturonase (EC 3.2.1.15) |
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -152 score = 3.92646 sequence = TATGTAAATGGACTTTTATTA Site: position = -65 score = 3.91853 sequence = AAAGGAAGCGTAATTCCTTTT Site: position = -100 score = 4.30717 sequence = TTCTATAAAAGTGTTTTATTT Gene: ECA1095: Polygalacturonase (EC 3.2.1.15) |
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|
|
Polygalacturonase (EC 3.2.1.15) |
| CRON 23. | |||||||||||||
| pelF |
|
|
|
|
|
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -291 score = 4.91898 sequence = TAATGAAACCATGTTTTACCA Gene: ECA3112: Pectate lyase precursor (EC 4.2.2.2) |
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|
Pectate lyase precursor (EC 4.2.2.2) |
| pehX |
|
|
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|
|
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|
|
Gene: ECA3111: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) |
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Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82) |
| CRON 24. | |||||||||||||
| rexZ |
|
|
|
|
|
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -66 score = 4.40842 sequence = AAATAAATTACCGTTGCGTTA Site: position = -138 score = 5.90557 sequence = TAATAAAACTATGTTTCATTT Gene: ECA4123: transcriptional regulator of exoenzymes |
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|
|
transcriptional regulator of exoenzymes |
| CRON 25. | |||||||||||||
| chmX |
|
|
|
|
|
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -172 score = 4.54803 sequence = TATTGAAACGTGATTTCTATC Gene: ECA3902: methyl-accepting chemotaxis protein |
|
|
|
methyl-accepting chemotaxis protein |
| CRON 26. | |||||||||||||
| kdgT |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -140 score = 6.01103 sequence = AAATAAAACAGCGTTTCAATT Gene: b3909: 2-keto-3-deoxygluconate permease |
|
*2
Citrobacter koseri ATCC BAA-895 Site: position = -147 score = 5.63978 sequence = AAATGAAACATAGTTTTGTTA Gene: CKO_03092: 2-keto-3-deoxygluconate permease Site: position = -231 score = 5.73285 sequence = AACTAAAACAGTGTTTTATTT Gene: CKO_03757: 2-keto-3-deoxygluconate permease |
|
*
Enterobacter sp. 638 Site: position = -232 score = 5.76988 sequence = AACTAAAACATTGTTTTATTT Gene: Ent638_0314: 2-keto-3-deoxygluconate permease |
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|
|
Gene: ECA4124: 2-keto-3-deoxygluconate permease |
|
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2-keto-3-deoxygluconate permease |
| CRON 27. | |||||||||||||
| pelC |
|
|
|
|
|
|
|
|
*3
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -102 score = 4.52376 sequence = CAATAAACCTTGATTTCATTT Site: position = -289 score = 5.39179 sequence = AAACGAAATATAATTTTATTT Gene: ECA4069: Pectate lyase B precursor (EC 4.2.2.2) Gene: ECA4068: Pectate lyase B precursor (EC 4.2.2.2) Site: position = -77 score = 4.09667 sequence = TGTTGAAACAGCCATTTTATT Site: position = -99 score = 4.52589 sequence = AGACAAACCTTAATTTCATTT Site: position = -231 score = 4.21069 sequence = AAATAGAAATCAGTTTCTATT Gene: ECA4067: Pectate lyase B precursor (EC 4.2.2.2) |
|
|
|
Pectate lyase B precursor (EC 4.2.2.2) |
| pelZ |
|
|
|
|
|
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -2 score = 4.0931 sequence = AAATGAAACGTTCTCTTCTGT Gene: ECA4070: pectate lyase |
|
|
|
COG3866 Pectate lyase |
| CRON 28. | |||||||||||||
| pelX |
|
|
|
|
*
Enterobacter sp. 638 Site: position = -60 score = 5.67677 sequence = AAAAGAAACGACGTTTCATCT Site: position = -102 score = 5.23501 sequence = AAGCAAAACAACGTTTTAATT Gene: Ent638_4134: Pectate disaccharide-lyase |
|
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|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -66 score = 5.96787 sequence = AAAAGAAACAGCGTTTCATTT Site: position = -113 score = 4.19447 sequence = ATAAAAAACAGACTTTATTTT Site: position = -130 score = 5.30977 sequence = AAATGACACGGTGTTTCATAA Gene: ECA4510: Pectate disaccharide-lyase |
|
|
|
Pectate disaccharide-lyase |
| CRON 29. | |||||||||||||
| kdgR |
Gene: b1827: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
Gene: STM1842: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
Gene: CKO_01146: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -161 score = 5.04145 sequence = AAATGAAACGGTTTTTTGAAT Gene: KPN_02343: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
Gene: Ent638_2397: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
|
*
Yersinia pestis KIM Site: position = -76 score = 4.7252 sequence = AATAAAACCATTGTTCTATTT Gene: y1876: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
Gene: Spro_2122: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
Gene: ECA2425: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
*
Edwardsiella tarda EIB202 Site: position = -46 score = 4.75787 sequence = TACTGAAACAGAGGTTCGTTT Gene: ETAE_1567: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
|
|
2-keto-3-deoxy-D-gluconate repressor, IclR family |
| CRON 30. | |||||||||||||
| ECA2137 |
|
|
|
|
|
|
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|
*2
Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA2136: putative exported protein Site: position = -349 score = 5.19474 sequence = AAATGAAACAATGCTTCCTTT Gene: ECA2137: putative exported protein |
|
|
|
putative exported protein |
| pelP |
|
|
|
|
Gene: Ent638_0482: Exopolygalacturonate lyase (EC 4.2.2.9) |
|
Gene: y3834: Exopolygalacturonate lyase (EC 4.2.2.9) |
|
Gene: ECA2135: Exopolygalacturonate lyase (EC 4.2.2.9) |
|
|
|
Exopolygalacturonate lyase (EC 4.2.2.9) |
| aslB |
|
|
|
|
|
|
Gene: y3226: chondro-6-sulfatase |
|
|
*
Edwardsiella tarda EIB202 Site: position = -70 score = 5.32845 sequence = ATAAGAAACATCGTTTTAAAT Gene: ETAE_2529: chondro-6-sulfatase |
Gene: PMI2142: chondro-6-sulfatase |
|
chondro-6-sulfatase |
| ETAE_2528 |
|
|
|
|
|
|
Gene: y3227: putative sulfatase |
|
|
Gene: ETAE_2528: putative sulfatase |
Gene: PMI2143: putative sulfatase |
|
putative sulfatase |
| ETAE_2527 |
|
|
|
|
|
|
Gene: y3228: hypothetical protein |
|
|
Gene: ETAE_2527: hypothetical protein |
Gene: PMI2144: hypothetical protein |
|
hypothetical protein |
| kdgM |
|
|
|
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -37 score = 5.59943 sequence = AAACGAAATGTCATTTTATTT Site: position = -58 score = 5.75266 sequence = AAATAAAATGATGTTTCATAA Gene: KPN_03267: Oligogalacturonate-specific porin protein KdgM |
*2
Enterobacter sp. 638 Site: position = -33 score = 5.41649 sequence = AAACGAAATGACATTTTAATT Site: position = -54 score = 4.91971 sequence = AAATAAAATGCAGTTCCATAA Gene: Ent638_3298: Oligogalacturonate-specific porin protein KdgM Site: position = -304 score = 4.93631 sequence = TCTCAAAACATCATTTCATTT Gene: Ent638_0483: Oligogalacturonate-specific porin protein KdgM |
|
*2
Yersinia pestis KIM Site: position = -103 score = 5.40329 sequence = AAATGAAACATTGCTTCTTTT Gene: y1880: Oligogalacturonate-specific porin protein KdgM Site: position = -75 score = 5.74237 sequence = AAATAAAATACTGTTTCATAA Gene: y3833: Oligogalacturonate-specific porin protein KdgM |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -153 score = 4.79515 sequence = ATTTGAAACCCTATTTTACTT Gene: ECA2407: Oligogalacturonate-specific porin protein KdgM |
|
|
|
Oligogalacturonate-specific porin protein KdgM |
| tpfX |
|
*
Salmonella typhimurium LT2 Site: position = -231 score = 5.35913 sequence = TTATGAAACATTGTTTCAGAT Gene: STM1931: ThiJ/PfpI-family hypothetical protein |
*
Citrobacter koseri ATCC BAA-895 Site: position = -199 score = 5.40986 sequence = TTTTGAAATGATGTTTCATAT Gene: CKO_01049: ThiJ/PfpI-family hypothetical protein |
|
*
Enterobacter sp. 638 Site: position = -42 score = 5.0274 sequence = GGATGAAACGCTGTTTTAAAT Gene: Ent638_2477: ThiJ/PfpI-family hypothetical protein |
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -85 score = 6.13996 sequence = TAATAAAACATCGTTTCATTT Gene: ECA0102: ThiJ/PfpI-family hypothetical protein |
|
|
|
ThiJ/PfpI-family hypothetical protein |
| CRON 31. | |||||||||||||
| dhfX |
|
|
|
|
|
|
Gene: y0507: putative exported protein |
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -32 score = 5.94697 sequence = AAAAGAAACGATGTTTTATTT Gene: ECA3785: putative exported protein |
|
|
|
putative exported protein |
| CRON 32. | |||||||||||||
| setC |
2
Escherichia coli str. K-12 substr. MG1655 Gene: b2170: lactose/glucose efflux system Gene: b3659: lactose/glucose efflux system |
Gene: STM2207: lactose/glucose efflux system |
Gene: CKO_00612: lactose/glucose efflux system |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -102 score = 5.00651 sequence = TTTTGAAACGCCTTTTTAATT Gene: KPN_02601: lactose/glucose efflux system |
*
Enterobacter sp. 638 Site: position = -109 score = 4.91445 sequence = TTTTGAAATGCTATTTTGATT Gene: Ent638_2764: lactose/glucose efflux system |
|
|
Gene: Spro_3234: lactose/glucose efflux system |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -88 score = 4.97518 sequence = TAATGAAACAAGATTTCTGTT Gene: ECA2730: lactose/glucose efflux system |
|
|
|
lactose/glucose efflux system |
| CRON 33. | |||||||||||||
| eda |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -359 score = 4.47851 sequence = TATTGGACCGGTGTTTCAAAA Gene: b1850: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
*
Salmonella typhimurium LT2 Site: position = -360 score = 4.45176 sequence = TATTGGACCGCCGTTTCAAAA Gene: STM1884: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -360 score = 4.51554 sequence = TATTGGACCGTTGTTTCAAAA Gene: CKO_01116: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -361 score = 4.45176 sequence = TATTGGACCGCCGTTTCAAAA Gene: KPN_02365: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
*
Enterobacter sp. 638 Site: position = -362 score = 4.47851 sequence = TATTGGACCGCTGTTTCAAAA Gene: Ent638_2419: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|
Gene: y2243: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
2
Serratia proteamaculans 568 Gene: Spro_2767: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) Gene: Spro_4500: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: ECA2478: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: ETAE_1452: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Gene: PMI2761: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |