Regulon of KdgR in Yersinia pestis KIM

Properties
Regulator type:	Transcription factor
TF locus tag:	y1876
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Regulog:	KdgR - Enterobacteriales
Statistics of regulated genes:
- Genes	19
- Operons	14
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 159 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - KdgR
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Pectin and polygalacturonate utlization

Regulated operons
	Locus Tag	Name	Function
Position: -103 Score: 5.4 Sequence: AAATGAAACATTGCTTCTTTT Locus tag: y1880 Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM
	y1880	kdgM	Oligogalacturonate-specific porin protein KdgM
Position: -158 Score: 4.8 Sequence: TCATGAAACTATGTTCCATTT Locus tag: y2593 Name: yeeO Funciton: predicted multidrug efflux system, MATE family
	y2593	yeeO	predicted multidrug efflux system, MATE family
Position: -47 Score: 4.5 Sequence: AAAGAAAACAGTTATTCATTA Position: -25 Score: 6.1 Sequence: AAATGAAACATTGTTTTAATT Locus tag: y2961 Name: togT Funciton: Oligogalacturonide transporter
	y2961	togT	Oligogalacturonide transporter
Position: -133 Score: 5.2 Sequence: ATATGAAACGGTGTTCTGTTT Locus tag: y3597 Name: ygjV Funciton: putative transport protein
	y3597	ygjV	putative transport protein
Position: -152 Score: 4.5 Sequence: AATCAAAACAACGTTCCGACT Position: -76 Score: 5.2 Sequence: GATTGAAACGATGTTTCTATT Locus tag: y1885 Name: pelW Funciton: Exopolygalacturonate lyase (EC 4.2.2.9) Locus tag: y1884 Name: togM Funciton: oligogalacturonide ABC transporter, inner membrane permease Locus tag: y1883 Name: togN Funciton: oligogalacturonide ABC transporter, inner membrane permease Locus tag: y1882 Name: togA Funciton: oligogalacturonide ABC transporter, ATP-binding component Locus tag: y1881 Name: togB Funciton: oligogalacturonide ABC transporter, solute-binding periplasmic protein
	y1885	pelW	Exopolygalacturonate lyase (EC 4.2.2.9)
	y1884	togM	oligogalacturonide ABC transporter, inner membrane permease
	y1883	togN	oligogalacturonide ABC transporter, inner membrane permease
	y1882	togA	oligogalacturonide ABC transporter, ATP-binding component
	y1881	togB	oligogalacturonide ABC transporter, solute-binding periplasmic protein
Position: -96 Score: 5.8 Sequence: AAATGAAACATTGTTTCTATA Locus tag: y1875 Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
	y1875	ogl	Oligogalacturonate lyase (EC 4.2.2.6)
Position: -22 Score: 5.8 Sequence: TAACGAAACATCATTTCATTT Locus tag: y1734 Name: kdgX Funciton: predicted 2-keto-3-deoxygluconate permease
	y1734	kdgX	predicted 2-keto-3-deoxygluconate permease
Position: -41 Score: 5.9 Sequence: TAATAAAACAGCATTTCATTT Locus tag: y0739 Name: yjgK Funciton: cytoplasmic protein involved in polygalacturonate utilization
	y0739	yjgK	cytoplasmic protein involved in polygalacturonate utilization
Position: -149 Score: 5.3 Sequence: AAATGGAATTGCGTTTCATTT Locus tag: y3757 Name: pemA Funciton: Putative pectinesterase (EC 3.1.1.11)
	y3757	pemA	Putative pectinesterase (EC 3.1.1.11)
Position: -225 Score: 5.1 Sequence: ATTTAAAACACCGTTTTAATC Locus tag: y3838 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	y3838	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Position: -155 Score: 6 Sequence: AAATGAAATGATGTTTTATTA Locus tag: y1888 Name: kdgF Funciton: Pectin degradation protein KdgF
	y1888	kdgF	Pectin degradation protein KdgF
Position: -201 Score: 6 Sequence: TAATAAAACATCATTTCATTT Locus tag: y1887 Name: kduI Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) Locus tag: y1886 Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
	y1887	kduI	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
	y1886	kduD	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -76 Score: 4.7 Sequence: AATAAAACCATTGTTCTATTT Locus tag: y1876 Name: kdgR Funciton: 2-keto-3-deoxy-D-gluconate repressor, IclR family
	y1876	kdgR	2-keto-3-deoxy-D-gluconate repressor, IclR family
Position: -75 Score: 5.7 Sequence: AAATAAAATACTGTTTCATAA Locus tag: y3833 Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM
	y3833	kdgM	Oligogalacturonate-specific porin protein KdgM

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of KdgR in Yersinia pestis KIM

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --