Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Properties
Regulator type: Transcription factor
TF locus tag: KPN_02343
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Enterobacteriales
Statistics of regulated genes:
- Genes 22
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 159 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -87
Score: 5.3
Sequence: TAATGGAACGATGTTTTAATA
Locus tag: KPN_03876
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
KPN_03876
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Position: -40
Score: 5.1
Sequence: ATTTGAAATGTTGTTTCAACA
Locus tag: KPN_02447
Name: yeeO
Funciton: predicted multidrug efflux system, MATE family
KPN_02447
yeeO
predicted multidrug efflux system, MATE family
Position: -254
Score: 5.1
Sequence: AATTGAAACGCTATTTTTGTT
Locus tag: KPN_02160
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
KPN_02160
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -97
Score: 5.1
Sequence: AACAAAAATAGCGTTTCAATT
Locus tag: KPN_02161
Name: ppsR
Funciton: PEP synthetase regulatory protein
KPN_02161
ppsR
PEP synthetase regulatory protein
Position: -46
Score: 5.2
Sequence: TATAAAAACAGTGTTTCAAAA
Locus tag: KPN_02398
Name: togT
Funciton: Oligogalacturonide transporter
KPN_02398
togT
Oligogalacturonide transporter
Position: -200
Score: 4.9
Sequence: AAGAGAAATGCTGTTTTATAA
Locus tag: KPN_02390
Name: rhiT
Funciton: Rhamnogalacturonide transporter
Locus tag: KPN_02389
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
KPN_02390
rhiT
Rhamnogalacturonide transporter
KPN_02389
rhiN
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Position: -39
Score: 5.8
Sequence: AAATGAAACAATGTTTCACTT
Locus tag: KPN_03255
Name: kdgF
Funciton: Pectin degradation protein KdgF
KPN_03255
kdgF
Pectin degradation protein KdgF
Position: -299
Score: 5.8
Sequence: ATTTAAAACGATGTTTCATTT
Position: -103
Score: 5.6
Sequence: TAATGAAACAATGTTTTGATA
Locus tag: KPN_03266
Name: ogl
Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
KPN_03266
ogl
Oligogalacturonate lyase (EC 4.2.2.6)
Position: -288
Score: 5
Sequence: TTTTGAAACATCGTTTCGACT
Position: -211
Score: 5.6
Sequence: AATTAAAACGGTGTTTTATAA
Locus tag: KPN_03256
Name: togM
Funciton: oligogalacturonide ABC transporter, inner membrane permease
Locus tag: KPN_03257
Name: togN
Funciton: oligogalacturonide ABC transporter, inner membrane permease
Locus tag: KPN_03258
Name: togA
Funciton: oligogalacturonide ABC transporter, ATP-binding component
Locus tag: KPN_03259
Name: togB
Funciton: oligogalacturonide ABC transporter, solute-binding periplasmic protein
KPN_03256
togM
oligogalacturonide ABC transporter, inner membrane permease
KPN_03257
togN
oligogalacturonide ABC transporter, inner membrane permease
KPN_03258
togA
oligogalacturonide ABC transporter, ATP-binding component
KPN_03259
togB
oligogalacturonide ABC transporter, solute-binding periplasmic protein
Position: -33
Score: 5.8
Sequence: AAATGAAATGCTGTTTTATAT
Locus tag: KPN_04658
Name: yjgK
Funciton: cytoplasmic protein involved in polygalacturonate utilization
KPN_04658
yjgK
cytoplasmic protein involved in polygalacturonate utilization
Position: -113
Score: 4.9
Sequence: AACAGAAATGGCGTTTCATCA
Locus tag: KPN_04460
Name: yjcB
Funciton: putative inner membrane protein
KPN_04460
yjcB
putative inner membrane protein
Position: -58
Score: 5.8
Sequence: AAATAAAATGATGTTTCATAA
Position: -37
Score: 5.6
Sequence: AAACGAAATGTCATTTTATTT
Locus tag: KPN_03267
Name: kdgM
Funciton: Oligogalacturonate-specific porin protein KdgM
KPN_03267
kdgM
Oligogalacturonate-specific porin protein KdgM
Position: -104
Score: 5.8
Sequence: AATCAAAACATTGTTTCATTT
Locus tag: KPN_01240
Name: kduD2
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
KPN_01240
kduD2
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -285
Score: 5
Sequence: ATTTGAAACGAGGTTTTTATT
Locus tag: KPN_02133
Name: pykF
Funciton: Pyruvate kinase (EC 2.7.1.40)
KPN_02133
pykF
Pyruvate kinase (EC 2.7.1.40)
Position: -161
Score: 5
Sequence: AAATGAAACGGTTTTTTGAAT
Locus tag: KPN_02343
Name: kdgR
Funciton: 2-keto-3-deoxy-D-gluconate repressor, IclR family
KPN_02343
kdgR
2-keto-3-deoxy-D-gluconate repressor, IclR family
Position: -207
Score: 5.8
Sequence: AAATGAAACATCGTTTTAAAT
Position: -139
Score: 5.2
Sequence: AAACGGAACTCTGTTTTATTT
Locus tag: KPN_03265
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
KPN_03265
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -102
Score: 5
Sequence: TTTTGAAACGCCTTTTTAATT
Locus tag: KPN_02601
Name: setC
Funciton: lactose/glucose efflux system
KPN_02601
setC
lactose/glucose efflux system
Position: -361
Score: 4.5
Sequence: TATTGGACCGCCGTTTCAAAA
Locus tag: KPN_02365
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
KPN_02365
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise