Regulon of KdgR in Klebsiella pneumoniae subsp. pneumoniae MGH 78578
| Regulator type: | Transcription factor |
| TF locus tag: | KPN_02343 |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Regulog: | KdgR - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 22 |
| - Operons | 18 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - KdgR
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Pectin and polygalacturonate utlization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -87
Score: 5.3 Sequence: TAATGGAACGATGTTTTAATA
Locus tag: KPN_03876
Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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kdgK
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
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Position: -40
Score: 5.1 Sequence: ATTTGAAATGTTGTTTCAACA
Locus tag: KPN_02447
Name: yeeO Funciton: predicted multidrug efflux system, MATE family |
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yeeO
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predicted multidrug efflux system, MATE family
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Position: -254
Score: 5.1 Sequence: AATTGAAACGCTATTTTTGTT
Locus tag: KPN_02160
Name: ppsA Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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ppsA
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Phosphoenolpyruvate synthase (EC 2.7.9.2)
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Position: -97
Score: 5.1 Sequence: AACAAAAATAGCGTTTCAATT
Locus tag: KPN_02161
Name: ppsR Funciton: PEP synthetase regulatory protein |
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ppsR
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PEP synthetase regulatory protein
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Position: -46
Score: 5.2 Sequence: TATAAAAACAGTGTTTCAAAA
Locus tag: KPN_02398
Name: togT Funciton: Oligogalacturonide transporter |
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togT
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Oligogalacturonide transporter
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Position: -200
Score: 4.9 Sequence: AAGAGAAATGCTGTTTTATAA
Locus tag: KPN_02390
Name: rhiT Funciton: Rhamnogalacturonide transporter
Locus tag: KPN_02389
Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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rhiT
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Rhamnogalacturonide transporter
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rhiN
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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Position: -39
Score: 5.8 Sequence: AAATGAAACAATGTTTCACTT
Locus tag: KPN_03255
Name: kdgF Funciton: Pectin degradation protein KdgF |
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kdgF
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Pectin degradation protein KdgF
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Position: -299
Score: 5.8 Sequence: ATTTAAAACGATGTTTCATTT
Position: -103
Score: 5.6 Sequence: TAATGAAACAATGTTTTGATA
Locus tag: KPN_03266
Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6) |
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ogl
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Oligogalacturonate lyase (EC 4.2.2.6)
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Position: -288
Score: 5 Sequence: TTTTGAAACATCGTTTCGACT
Position: -211
Score: 5.6 Sequence: AATTAAAACGGTGTTTTATAA
Locus tag: KPN_03256
Name: togM Funciton: oligogalacturonide ABC transporter, inner membrane permease
Locus tag: KPN_03257
Name: togN Funciton: oligogalacturonide ABC transporter, inner membrane permease
Locus tag: KPN_03258
Name: togA Funciton: oligogalacturonide ABC transporter, ATP-binding component
Locus tag: KPN_03259
Name: togB Funciton: oligogalacturonide ABC transporter, solute-binding periplasmic protein |
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togM
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oligogalacturonide ABC transporter, inner membrane permease
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togN
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oligogalacturonide ABC transporter, inner membrane permease
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togA
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oligogalacturonide ABC transporter, ATP-binding component
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togB
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oligogalacturonide ABC transporter, solute-binding periplasmic protein
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Position: -33
Score: 5.8 Sequence: AAATGAAATGCTGTTTTATAT
Locus tag: KPN_04658
Name: yjgK Funciton: cytoplasmic protein involved in polygalacturonate utilization |
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yjgK
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cytoplasmic protein involved in polygalacturonate utilization
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Position: -113
Score: 4.9 Sequence: AACAGAAATGGCGTTTCATCA
Locus tag: KPN_04460
Name: yjcB Funciton: putative inner membrane protein |
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yjcB
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putative inner membrane protein
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Position: -58
Score: 5.8 Sequence: AAATAAAATGATGTTTCATAA
Position: -37
Score: 5.6 Sequence: AAACGAAATGTCATTTTATTT
Locus tag: KPN_03267
Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM |
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kdgM
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Oligogalacturonate-specific porin protein KdgM
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Position: -104
Score: 5.8 Sequence: AATCAAAACATTGTTTCATTT
Locus tag: KPN_01240
Name: kduD2 Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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kduD2
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2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
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Position: -285
Score: 5 Sequence: ATTTGAAACGAGGTTTTTATT
Locus tag: KPN_02133
Name: pykF Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykF
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Pyruvate kinase (EC 2.7.1.40)
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Position: -161
Score: 5 Sequence: AAATGAAACGGTTTTTTGAAT
Locus tag: KPN_02343
Name: kdgR Funciton: 2-keto-3-deoxy-D-gluconate repressor, IclR family |
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kdgR
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2-keto-3-deoxy-D-gluconate repressor, IclR family
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Position: -207
Score: 5.8 Sequence: AAATGAAACATCGTTTTAAAT
Position: -139
Score: 5.2 Sequence: AAACGGAACTCTGTTTTATTT
Locus tag: KPN_03265
Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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kduD
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2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
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Position: -102
Score: 5 Sequence: TTTTGAAACGCCTTTTTAATT
Locus tag: KPN_02601
Name: setC Funciton: lactose/glucose efflux system |
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setC
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lactose/glucose efflux system
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Position: -361
Score: 4.5 Sequence: TATTGGACCGCCGTTTCAAAA
Locus tag: KPN_02365
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |