Regulon of KdgR in Erwinia carotovora subsp. atroseptica SCRI1043

Properties
Regulator type:	Transcription factor
TF locus tag:	ECA2425
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Regulog:	KdgR - Enterobacteriales
Statistics of regulated genes:
- Genes	42
- Operons	31
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 159 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - KdgR
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Pectin and polygalacturonate utlization

Regulated operons
	Locus Tag	Name	Function
Position: -213 Score: 5.1 Sequence: TATTAAAATAACATTTCACTT Locus tag: ECA3252 Name: paeY Funciton: pectin acetylesterase Locus tag: ECA3253 Name: pemA Funciton: Putative pectinesterase (EC 3.1.1.11)
	ECA3252	paeY	pectin acetylesterase
	ECA3253	pemA	Putative pectinesterase (EC 3.1.1.11)
Position: -227 Score: 5.6 Sequence: TATTAAAACGCCATTTCATTA Locus tag: ECA1853 Name: ppsA Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
	ECA1853	ppsA	Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -94 Score: 5.6 Sequence: TAATGAAATGGCGTTTTAATA Locus tag: ECA1852 Name: ppsR Funciton: PEP synthetase regulatory protein
	ECA1852	ppsR	PEP synthetase regulatory protein
Position: -140 Score: 5.1 Sequence: AATAGAAACGTCATTTTAAAA Locus tag: ECA2762 Name: yeeO Funciton: predicted multidrug efflux system, MATE family
	ECA2762	yeeO	predicted multidrug efflux system, MATE family
Position: -60 Score: 4.5 Sequence: TAAAGAAATGATAGTTCAATC Position: -38 Score: 5.5 Sequence: AACTGAAATATTGTTTCATAT Locus tag: ECA0817 Name: togT Funciton: Oligogalacturonide transporter
	ECA0817	togT	Oligogalacturonide transporter
Position: -70 Score: 6.2 Sequence: AAATAAAACGGCGTTTCATTT Locus tag: ECA0648 Name: ygjV Funciton: putative transport protein
	ECA0648	ygjV	putative transport protein
Position: -180 Score: 5.8 Sequence: AAATGAAACATTGTTTCTATA Locus tag: ECA2426 Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
	ECA2426	ogl	Oligogalacturonate lyase (EC 4.2.2.6)
Position: -139 Score: 4.5 Sequence: AATCAAAACAACGTTCCGACT Position: -61 Score: 5.3 Sequence: AATCAAAACAGTGTTTCTATT Locus tag: ECA2402 Name: pelW Funciton: Exopolygalacturonate lyase (EC 4.2.2.9) Locus tag: ECA2403 Name: togM Funciton: oligogalacturonide ABC transporter, inner membrane permease Locus tag: ECA2404 Name: togN Funciton: oligogalacturonide ABC transporter, inner membrane permease Locus tag: ECA2405 Name: togA Funciton: oligogalacturonide ABC transporter, ATP-binding component Locus tag: ECA2406 Name: togB Funciton: oligogalacturonide ABC transporter, solute-binding periplasmic protein
	ECA2402	pelW	Exopolygalacturonate lyase (EC 4.2.2.9)
	ECA2403	togM	oligogalacturonide ABC transporter, inner membrane permease
	ECA2404	togN	oligogalacturonide ABC transporter, inner membrane permease
	ECA2405	togA	oligogalacturonide ABC transporter, ATP-binding component
	ECA2406	togB	oligogalacturonide ABC transporter, solute-binding periplasmic protein
Position: -209 Score: 6.1 Sequence: AAATAAAACATTATTTCATTT Locus tag: ECA2400 Name: kduI Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) Locus tag: ECA2401 Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
	ECA2400	kduI	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
	ECA2401	kduD	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -167 Score: 4.7 Sequence: AGTTAAAATGCCTTTTTATAA Locus tag: ECA3560 Name: rhiT Funciton: Rhamnogalacturonide transporter Locus tag: ECA3559 Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
	ECA3560	rhiT	Rhamnogalacturonide transporter
	ECA3559	rhiN	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Position: -41 Score: 5.1 Sequence: TTGTAAAACAGGGTTTCATTT Locus tag: ECA0383 Name: yjgK Funciton: cytoplasmic protein involved in polygalacturonate utilization
	ECA0383	yjgK	cytoplasmic protein involved in polygalacturonate utilization
Position: -37 Score: 5.7 Sequence: TATTAAAACGATATTTCATTA Locus tag: ECA1190 Name: pehN Funciton: putative polygalacturonase
	ECA1190	pehN	putative polygalacturonase
Position: -291 Score: 4.9 Sequence: TAATGAAACCATGTTTTACCA Locus tag: ECA3112 Name: pelF Funciton: Pectate lyase precursor (EC 4.2.2.2) Locus tag: ECA3111 Name: pehX Funciton: Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)
	ECA3112	pelF	Pectate lyase precursor (EC 4.2.2.2)
	ECA3111	pehX	Exo-poly-alpha-D-galacturonosidase precursor (EC 3.2.1.82)
Position: -239 Score: 5.6 Sequence: ATATAAAACAGCATTTCATAT Locus tag: ECA0357 Name: rhiA Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
	ECA0357	rhiA	predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Position: -88 Score: 5 Sequence: TAATGAAACAAGATTTCTGTT Locus tag: ECA2730 Name: sotA Funciton: sugar efflux transporter
	ECA2730	sotA	sugar efflux transporter
Position: -88 Score: 5 Sequence: TAATGAAACAAGATTTCTGTT Locus tag: ECA2730 Name: setC Funciton: lactose/glucose efflux system
	ECA2730	setC	lactose/glucose efflux system
Position: -259 Score: 5.1 Sequence: ATACGGAACGTCGTTTCAATT Locus tag: ECA1867 Name: pykF Funciton: Pyruvate kinase (EC 2.7.1.40)
	ECA1867	pykF	Pyruvate kinase (EC 2.7.1.40)
Position: -54 Score: 5.1 Sequence: AATTGAAATACAGTTTTAAAA Locus tag: ECA1742 Name: spiX Funciton: predicted 5-keto-4-deoxyuronate isomerase
	ECA1742	spiX	predicted 5-keto-4-deoxyuronate isomerase
Position: -125 Score: 5.4 Sequence: AAATAAAACATCGTTTCAAGA Locus tag: ECA4360 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	ECA4360	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Position: -174 Score: 6.1 Sequence: AAATGAAATAATGTTTTATTT Locus tag: ECA2399 Name: kdgF Funciton: Pectin degradation protein KdgF
	ECA2399	kdgF	Pectin degradation protein KdgF
Position: -98 Score: 5.6 Sequence: AAATAAAACCTCGTTTCTTTT Position: -76 Score: 4 Sequence: TATCACAATAAGGTTCCATTT Locus tag: ECA0732 Name: sghX Funciton: putative exported protein
	ECA0732	sghX	putative exported protein
Position: -153 Score: 4.8 Sequence: ATTTGAAACCCTATTTTACTT Locus tag: ECA2407 Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM
	ECA2407	kdgM	Oligogalacturonate-specific porin protein KdgM
Position: -152 Score: 3.9 Sequence: TATGTAAATGGACTTTTATTA Position: -100 Score: 4.3 Sequence: TTCTATAAAAGTGTTTTATTT Position: -65 Score: 3.9 Sequence: AAAGGAAGCGTAATTCCTTTT Locus tag: ECA1095 Name: pehA Funciton: Polygalacturonase (EC 3.2.1.15)
	ECA1095	pehA	Polygalacturonase (EC 3.2.1.15)
Position: -138 Score: 5.9 Sequence: TAATAAAACTATGTTTCATTT Position: -66 Score: 4.4 Sequence: AAATAAATTACCGTTGCGTTA Locus tag: ECA4123 Name: rexZ Funciton: transcriptional regulator of exoenzymes
	ECA4123	rexZ	transcriptional regulator of exoenzymes
Position: -172 Score: 4.5 Sequence: TATTGAAACGTGATTTCTATC Locus tag: ECA3902 Name: null Funciton: methyl-accepting chemotaxis protein
	ECA3902		methyl-accepting chemotaxis protein
Position: -289 Score: 5.4 Sequence: AAACGAAATATAATTTTATTT Position: -102 Score: 4.5 Sequence: CAATAAACCTTGATTTCATTT Position: -2 Score: 4.1 Sequence: AAATGAAACGTTCTCTTCTGT Locus tag: ECA4069 Name: pelC Funciton: Pectate lyase B precursor (EC 4.2.2.2) Locus tag: ECA4070 Name: pelZ Funciton: pectate lyase
	ECA4069	pelC	Pectate lyase B precursor (EC 4.2.2.2)
	ECA4070	pelZ	pectate lyase
Position: -231 Score: 4.2 Sequence: AAATAGAAATCAGTTTCTATT Position: -99 Score: 4.5 Sequence: AGACAAACCTTAATTTCATTT Position: -77 Score: 4.1 Sequence: TGTTGAAACAGCCATTTTATT Locus tag: ECA4067 Name: pelC Funciton: Pectate lyase B precursor (EC 4.2.2.2)
	ECA4067	pelC	Pectate lyase B precursor (EC 4.2.2.2)
Position: -130 Score: 5.3 Sequence: AAATGACACGGTGTTTCATAA Position: -113 Score: 4.2 Sequence: ATAAAAAACAGACTTTATTTT Position: -66 Score: 6 Sequence: AAAAGAAACAGCGTTTCATTT Locus tag: ECA4510 Name: pelX Funciton: Pectate disaccharide-lyase
	ECA4510	pelX	Pectate disaccharide-lyase
Position: -85 Score: 6.1 Sequence: TAATAAAACATCGTTTCATTT Locus tag: ECA0102 Name: tpfX Funciton: ThiJ/PfpI-family hypothetical protein
	ECA0102	tpfX	ThiJ/PfpI-family hypothetical protein
Position: -349 Score: 5.2 Sequence: AAATGAAACAATGCTTCCTTT Locus tag: ECA2137 Name: ECA2137 Funciton: putative exported protein Locus tag: ECA2136 Name: ECA2137 Funciton: putative exported protein Locus tag: ECA2135 Name: pelP Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
	ECA2137	ECA2137	putative exported protein
	ECA2136	ECA2137	putative exported protein
	ECA2135	pelP	Exopolygalacturonate lyase (EC 4.2.2.9)
Position: -32 Score: 5.9 Sequence: AAAAGAAACGATGTTTTATTT Locus tag: ECA3785 Name: dhfX Funciton: putative exported protein
	ECA3785	dhfX	putative exported protein

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of KdgR in Erwinia carotovora subsp. atroseptica SCRI1043

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --