Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Enterobacter sp. 638

Properties
Regulator type: Transcription factor
TF locus tag: Ent638_2397
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Enterobacteriales
Statistics of regulated genes:
- Genes 30
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 159 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -74
Score: 5
Sequence: ATTTGAAATGTAGTTTCAACT
Locus tag: Ent638_2574
Name: yeeO
Funciton: predicted multidrug efflux system, MATE family
yeeO
predicted multidrug efflux system, MATE family

Position: -249
Score: 5.3
Sequence: AAATGAAATGGTGTTTTTAAT
Locus tag: Ent638_1745
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)

Position: -107
Score: 5.3
Sequence: ATTAAAAACACCATTTCATTT
Locus tag: Ent638_1744
Name: ppsR
Funciton: PEP synthetase regulatory protein
ppsR
PEP synthetase regulatory protein

Position: -38
Score: 5.5
Sequence: AATTAAAACAATGTTTCACTA
Locus tag: Ent638_3287
Name: kdgF
Funciton: Pectin degradation protein KdgF
kdgF
Pectin degradation protein KdgF

Position: -189
Score: 5.6
Sequence: AAAAGAAACGCTGTTTTATAA
Locus tag: Ent638_2444
Name: rhiT
Funciton: Rhamnogalacturonide transporter
Locus tag: Ent638_2443
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
rhiT
Rhamnogalacturonide transporter
rhiN
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)

Position: -105
Score: 5
Sequence: CATTGAAACGTCGTTTTGATA
Locus tag: Ent638_3297
Name: ogl
Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
ogl
Oligogalacturonate lyase (EC 4.2.2.6)

Position: -226
Score: 5.1
Sequence: AATTAAAACGCCGTTTTACAA
Locus tag: Ent638_3289
Name: togM
Funciton: oligogalacturonide ABC transporter, inner membrane permease
Locus tag: Ent638_3290
Name: togN
Funciton: oligogalacturonide ABC transporter, inner membrane permease
Locus tag: Ent638_3291
Name: togA
Funciton: oligogalacturonide ABC transporter, ATP-binding component
Locus tag: Ent638_3292
Name: togB
Funciton: oligogalacturonide ABC transporter, solute-binding periplasmic protein
Locus tag: Ent638_3293
Name: ogl
Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
togM
oligogalacturonide ABC transporter, inner membrane permease
togN
oligogalacturonide ABC transporter, inner membrane permease
togA
oligogalacturonide ABC transporter, ATP-binding component
togB
oligogalacturonide ABC transporter, solute-binding periplasmic protein
ogl
Oligogalacturonate lyase (EC 4.2.2.6)

Position: -33
Score: 5.9
Sequence: AATTGAAACGTCATTTTATTT
Locus tag: Ent638_0375
Name: kdgX
Funciton: predicted 2-keto-3-deoxygluconate permease
kdgX
predicted 2-keto-3-deoxygluconate permease

Position: -34
Score: 6
Sequence: AAATGAAACATTGTTTTATAT
Locus tag: Ent638_0453
Name: yjgK
Funciton: cytoplasmic protein involved in polygalacturonate utilization
yjgK
cytoplasmic protein involved in polygalacturonate utilization

Position: -232
Score: 5.8
Sequence: AACTAAAACATTGTTTTATTT
Locus tag: Ent638_0314
Name: kdgT
Funciton: 2-keto-3-deoxygluconate permease
kdgT
2-keto-3-deoxygluconate permease

Position: -134
Score: 4.5
Sequence: TTTCAAACCATCGTTTCAAAA
Position: -49
Score: 4.8
Sequence: AACTAAAACAACGTTTTAACG
Locus tag: Ent638_3876
Name: rhiA
Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Locus tag: Ent638_3875
Name: rhiB
Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
Locus tag: Ent638_3874
Name: rhiC
Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
rhiA
predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
rhiB
predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
rhiC
predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit

Position: -54
Score: 4.9
Sequence: AAATAAAATGCAGTTCCATAA
Position: -33
Score: 5.4
Sequence: AAACGAAATGACATTTTAATT
Locus tag: Ent638_3298
Name: kdgM
Funciton: Oligogalacturonate-specific porin protein KdgM
kdgM
Oligogalacturonate-specific porin protein KdgM

Position: -94
Score: 5.6
Sequence: TTTTAAAACATCATTTCATTT
Locus tag: Ent638_1716
Name: kduD2
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
kduD2
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)

Position: -286
Score: 5.1
Sequence: TTTTGAAACGCCGTTTCCATT
Locus tag: Ent638_1768
Name: pykF
Funciton: Pyruvate kinase (EC 2.7.1.40)
pykF
Pyruvate kinase (EC 2.7.1.40)

Position: -84
Score: 5.1
Sequence: TTATGGAACGACGTTTTAATA
Locus tag: Ent638_3923
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)

Position: -127
Score: 5.4
Sequence: AACTGAAACAACGTTTTAAAT
Position: -60
Score: 5
Sequence: AATCGGAACATTGTTTCGTTA
Locus tag: Ent638_3296
Name: kduI
Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: Ent638_3295
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)

Position: -102
Score: 5.2
Sequence: AAGCAAAACAACGTTTTAATT
Position: -60
Score: 5.7
Sequence: AAAAGAAACGACGTTTCATCT
Locus tag: Ent638_4134
Name: pelX
Funciton: Pectate disaccharide-lyase
pelX
Pectate disaccharide-lyase

Position: -109
Score: 4.9
Sequence: TTTTGAAATGCTATTTTGATT
Locus tag: Ent638_2764
Name: setC
Funciton: lactose/glucose efflux system
setC
lactose/glucose efflux system

Position: -42
Score: 5
Sequence: GGATGAAACGCTGTTTTAAAT
Locus tag: Ent638_2477
Name: tpfX
Funciton: ThiJ/PfpI-family hypothetical protein
tpfX
ThiJ/PfpI-family hypothetical protein

Position: -304
Score: 4.9
Sequence: TCTCAAAACATCATTTCATTT
Locus tag: Ent638_0483
Name: kdgM
Funciton: Oligogalacturonate-specific porin protein KdgM
Locus tag: Ent638_0482
Name: pelP
Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
kdgM
Oligogalacturonate-specific porin protein KdgM
pelP
Exopolygalacturonate lyase (EC 4.2.2.9)

Position: -362
Score: 4.5
Sequence: TATTGGACCGCTGTTTCAAAA
Locus tag: Ent638_2419
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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