Regulon of KdgR in Enterobacter sp. 638

Properties
Regulator type:	Transcription factor
TF locus tag:	Ent638_2397
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Regulog:	KdgR - Enterobacteriales
Statistics of regulated genes:
- Genes	30
- Operons	21
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 159 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - KdgR
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Pectin and polygalacturonate utlization

Regulated operons
	Locus Tag	Name	Function
Position: -74 Score: 5 Sequence: ATTTGAAATGTAGTTTCAACT Locus tag: Ent638_2574 Name: yeeO Funciton: predicted multidrug efflux system, MATE family
	Ent638_2574	yeeO	predicted multidrug efflux system, MATE family
Position: -249 Score: 5.3 Sequence: AAATGAAATGGTGTTTTTAAT Locus tag: Ent638_1745 Name: ppsA Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
	Ent638_1745	ppsA	Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -107 Score: 5.3 Sequence: ATTAAAAACACCATTTCATTT Locus tag: Ent638_1744 Name: ppsR Funciton: PEP synthetase regulatory protein
	Ent638_1744	ppsR	PEP synthetase regulatory protein
Position: -38 Score: 5.5 Sequence: AATTAAAACAATGTTTCACTA Locus tag: Ent638_3287 Name: kdgF Funciton: Pectin degradation protein KdgF
	Ent638_3287	kdgF	Pectin degradation protein KdgF
Position: -189 Score: 5.6 Sequence: AAAAGAAACGCTGTTTTATAA Locus tag: Ent638_2444 Name: rhiT Funciton: Rhamnogalacturonide transporter Locus tag: Ent638_2443 Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
	Ent638_2444	rhiT	Rhamnogalacturonide transporter
	Ent638_2443	rhiN	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Position: -105 Score: 5 Sequence: CATTGAAACGTCGTTTTGATA Locus tag: Ent638_3297 Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
	Ent638_3297	ogl	Oligogalacturonate lyase (EC 4.2.2.6)
Position: -226 Score: 5.1 Sequence: AATTAAAACGCCGTTTTACAA Locus tag: Ent638_3289 Name: togM Funciton: oligogalacturonide ABC transporter, inner membrane permease Locus tag: Ent638_3290 Name: togN Funciton: oligogalacturonide ABC transporter, inner membrane permease Locus tag: Ent638_3291 Name: togA Funciton: oligogalacturonide ABC transporter, ATP-binding component Locus tag: Ent638_3292 Name: togB Funciton: oligogalacturonide ABC transporter, solute-binding periplasmic protein Locus tag: Ent638_3293 Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
	Ent638_3289	togM	oligogalacturonide ABC transporter, inner membrane permease
	Ent638_3290	togN	oligogalacturonide ABC transporter, inner membrane permease
	Ent638_3291	togA	oligogalacturonide ABC transporter, ATP-binding component
	Ent638_3292	togB	oligogalacturonide ABC transporter, solute-binding periplasmic protein
	Ent638_3293	ogl	Oligogalacturonate lyase (EC 4.2.2.6)
Position: -33 Score: 5.9 Sequence: AATTGAAACGTCATTTTATTT Locus tag: Ent638_0375 Name: kdgX Funciton: predicted 2-keto-3-deoxygluconate permease
	Ent638_0375	kdgX	predicted 2-keto-3-deoxygluconate permease
Position: -34 Score: 6 Sequence: AAATGAAACATTGTTTTATAT Locus tag: Ent638_0453 Name: yjgK Funciton: cytoplasmic protein involved in polygalacturonate utilization
	Ent638_0453	yjgK	cytoplasmic protein involved in polygalacturonate utilization
Position: -232 Score: 5.8 Sequence: AACTAAAACATTGTTTTATTT Locus tag: Ent638_0314 Name: kdgT Funciton: 2-keto-3-deoxygluconate permease
	Ent638_0314	kdgT	2-keto-3-deoxygluconate permease
Position: -134 Score: 4.5 Sequence: TTTCAAACCATCGTTTCAAAA Position: -49 Score: 4.8 Sequence: AACTAAAACAACGTTTTAACG Locus tag: Ent638_3876 Name: rhiA Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit Locus tag: Ent638_3875 Name: rhiB Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit Locus tag: Ent638_3874 Name: rhiC Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
	Ent638_3876	rhiA	predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
	Ent638_3875	rhiB	predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
	Ent638_3874	rhiC	predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
Position: -54 Score: 4.9 Sequence: AAATAAAATGCAGTTCCATAA Position: -33 Score: 5.4 Sequence: AAACGAAATGACATTTTAATT Locus tag: Ent638_3298 Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM
	Ent638_3298	kdgM	Oligogalacturonate-specific porin protein KdgM
Position: -94 Score: 5.6 Sequence: TTTTAAAACATCATTTCATTT Locus tag: Ent638_1716 Name: kduD2 Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
	Ent638_1716	kduD2	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -286 Score: 5.1 Sequence: TTTTGAAACGCCGTTTCCATT Locus tag: Ent638_1768 Name: pykF Funciton: Pyruvate kinase (EC 2.7.1.40)
	Ent638_1768	pykF	Pyruvate kinase (EC 2.7.1.40)
Position: -84 Score: 5.1 Sequence: TTATGGAACGACGTTTTAATA Locus tag: Ent638_3923 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	Ent638_3923	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Position: -127 Score: 5.4 Sequence: AACTGAAACAACGTTTTAAAT Position: -60 Score: 5 Sequence: AATCGGAACATTGTTTCGTTA Locus tag: Ent638_3296 Name: kduI Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) Locus tag: Ent638_3295 Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
	Ent638_3296	kduI	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
	Ent638_3295	kduD	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -102 Score: 5.2 Sequence: AAGCAAAACAACGTTTTAATT Position: -60 Score: 5.7 Sequence: AAAAGAAACGACGTTTCATCT Locus tag: Ent638_4134 Name: pelX Funciton: Pectate disaccharide-lyase
	Ent638_4134	pelX	Pectate disaccharide-lyase
Position: -109 Score: 4.9 Sequence: TTTTGAAATGCTATTTTGATT Locus tag: Ent638_2764 Name: setC Funciton: lactose/glucose efflux system
	Ent638_2764	setC	lactose/glucose efflux system
Position: -42 Score: 5 Sequence: GGATGAAACGCTGTTTTAAAT Locus tag: Ent638_2477 Name: tpfX Funciton: ThiJ/PfpI-family hypothetical protein
	Ent638_2477	tpfX	ThiJ/PfpI-family hypothetical protein
Position: -304 Score: 4.9 Sequence: TCTCAAAACATCATTTCATTT Locus tag: Ent638_0483 Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM Locus tag: Ent638_0482 Name: pelP Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
	Ent638_0483	kdgM	Oligogalacturonate-specific porin protein KdgM
	Ent638_0482	pelP	Exopolygalacturonate lyase (EC 4.2.2.9)
Position: -362 Score: 4.5 Sequence: TATTGGACCGCTGTTTCAAAA Locus tag: Ent638_2419 Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
	Ent638_2419	eda	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of KdgR in Enterobacter sp. 638

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --