Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Salmonella typhimurium LT2

Properties
Regulator type: Transcription factor
TF locus tag: STM1842
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Enterobacteriales
Statistics of regulated genes:
- Genes 15
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 159 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -85
Score: 4.9
Sequence: TAATGGACCGATGTTTTAATA
Locus tag: STM3612
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
STM3612
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Position: -7
Score: 5
Sequence: TATTGAAATGTGGTTTCAACT
Locus tag: STM2013
Name: yeeO
Funciton: predicted multidrug efflux system, MATE family
STM2013
yeeO
predicted multidrug efflux system, MATE family
Position: -226
Score: 4.9
Sequence: AATGAAAAGTGTGTTTCATTT
Locus tag: STM1349
Name: ppsA
Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2)
STM1349
ppsA
Phosphoenolpyruvate synthase (EC 2.7.9.2)
Position: -123
Score: 6.2
Sequence: AAATGAAACGTTGTTTTATTT
Position: -58
Score: 5.3
Sequence: AATCAAAACAGTGTTTTGATT
Locus tag: STM3018
Name: kduI
Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: STM3017
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
STM3018
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
STM3017
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Position: -32
Score: 5.7
Sequence: AAATAAAACGCTGTTTTAACT
Locus tag: STM4468
Name: yjgK
Funciton: cytoplasmic protein involved in polygalacturonate utilization
STM4468
yjgK
cytoplasmic protein involved in polygalacturonate utilization
Position: -120
Score: 5.4
Sequence: AATAGAAACAATGTTTCATTC
Locus tag: STM4263
Name: yjcB
Funciton: putative inner membrane protein
STM4263
yjcB
putative inner membrane protein
Position: -34
Score: 5.8
Sequence: AAATAAAACATTATTTTAATT
Locus tag: STM4395
Name: kdgX
Funciton: predicted 2-keto-3-deoxygluconate permease
STM4395
kdgX
predicted 2-keto-3-deoxygluconate permease
Position: -286
Score: 4.7
Sequence: TTTTGAAACAGGGTTTTCATT
Locus tag: STM1378
Name: pykF
Funciton: Pyruvate kinase (EC 2.7.1.40)
STM1378
pykF
Pyruvate kinase (EC 2.7.1.40)
Position: -231
Score: 5.4
Sequence: TTATGAAACATTGTTTCAGAT
Locus tag: STM1931
Name: tpfX
Funciton: ThiJ/PfpI-family hypothetical protein
STM1931
tpfX
ThiJ/PfpI-family hypothetical protein
Position: -131
Score: 4.9
Sequence: AAATGAAACACACTTTTCATT
Locus tag: STM1348
Name: ppsR
Funciton: PEP synthetase regulatory protein
STM1348
ppsR
PEP synthetase regulatory protein
Position: -126
Score: 4.7
Sequence: ATGTGAAACAGGGTTTCAAAA
Locus tag: STM4054
Name: rhiA
Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Locus tag: STM4053
Name: rhiB
Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
Locus tag: STM4052
Name: rhiC
Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
STM4054
rhiA
predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
STM4053
rhiB
predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
STM4052
rhiC
predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
Position: -360
Score: 4.5
Sequence: TATTGGACCGCCGTTTCAAAA
Locus tag: STM1884
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
STM1884
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise