Regulon of KdgR in Salmonella typhimurium LT2
| Regulator type: | Transcription factor |
| TF locus tag: | STM1842 |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Regulog: | KdgR - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - KdgR
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Pectin and polygalacturonate utlization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -85
Score: 4.9 Sequence: TAATGGACCGATGTTTTAATA
Locus tag: STM3612
Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
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kdgK
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
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Position: -7
Score: 5 Sequence: TATTGAAATGTGGTTTCAACT
Locus tag: STM2013
Name: yeeO Funciton: predicted multidrug efflux system, MATE family |
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yeeO
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predicted multidrug efflux system, MATE family
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Position: -226
Score: 4.9 Sequence: AATGAAAAGTGTGTTTCATTT
Locus tag: STM1349
Name: ppsA Funciton: Phosphoenolpyruvate synthase (EC 2.7.9.2) |
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ppsA
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Phosphoenolpyruvate synthase (EC 2.7.9.2)
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Position: -123
Score: 6.2 Sequence: AAATGAAACGTTGTTTTATTT
Position: -58
Score: 5.3 Sequence: AATCAAAACAGTGTTTTGATT
Locus tag: STM3018
Name: kduI Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: STM3017
Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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kduI
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4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
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kduD
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2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
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Position: -32
Score: 5.7 Sequence: AAATAAAACGCTGTTTTAACT
Locus tag: STM4468
Name: yjgK Funciton: cytoplasmic protein involved in polygalacturonate utilization |
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yjgK
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cytoplasmic protein involved in polygalacturonate utilization
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Position: -120
Score: 5.4 Sequence: AATAGAAACAATGTTTCATTC
Locus tag: STM4263
Name: yjcB Funciton: putative inner membrane protein |
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yjcB
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putative inner membrane protein
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Position: -34
Score: 5.8 Sequence: AAATAAAACATTATTTTAATT
Locus tag: STM4395
Name: kdgX Funciton: predicted 2-keto-3-deoxygluconate permease |
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kdgX
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predicted 2-keto-3-deoxygluconate permease
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Position: -286
Score: 4.7 Sequence: TTTTGAAACAGGGTTTTCATT
Locus tag: STM1378
Name: pykF Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykF
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Pyruvate kinase (EC 2.7.1.40)
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Position: -231
Score: 5.4 Sequence: TTATGAAACATTGTTTCAGAT
Locus tag: STM1931
Name: tpfX Funciton: ThiJ/PfpI-family hypothetical protein |
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tpfX
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ThiJ/PfpI-family hypothetical protein
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Position: -131
Score: 4.9 Sequence: AAATGAAACACACTTTTCATT
Locus tag: STM1348
Name: ppsR Funciton: PEP synthetase regulatory protein |
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ppsR
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PEP synthetase regulatory protein
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Position: -126
Score: 4.7 Sequence: ATGTGAAACAGGGTTTCAAAA
Locus tag: STM4054
Name: rhiA Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Locus tag: STM4053
Name: rhiB Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
Locus tag: STM4052
Name: rhiC Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit |
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rhiA
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predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
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rhiB
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predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
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rhiC
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predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
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Position: -360
Score: 4.5 Sequence: TATTGGACCGCCGTTTCAAAA
Locus tag: STM1884
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |