Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rhiA gene

Properties
Regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Built upon 159 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Citrobacter koseri ATCC BAA-895
Position: -138
Score: 5.08341
Sequence: TTTTAAACCATCGTTTCAATT
Position: -50
Score: 4.82111
Sequence: AACTAAAACAATGTTTTAACG
Locus tag: CKO_04899
Name: rhiA
Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
rhiA -138 5.1 TTTTAAACCATCGTTTCAATT CKO_04899
-50 4.8 AACTAAAACAATGTTTTAACG
Enterobacter sp. 638
Position: -134
Score: 4.5088
Sequence: TTTCAAACCATCGTTTCAAAA
Position: -49
Score: 4.79435
Sequence: AACTAAAACAACGTTTTAACG
Locus tag: Ent638_3876
Name: rhiA
Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Locus tag: Ent638_3875
Name: rhiB
Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
Locus tag: Ent638_3874
Name: rhiC
Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
rhiA-rhiB-rhiC -134 4.5 TTTCAAACCATCGTTTCAAAA Ent638_3876
-49 4.8 AACTAAAACAACGTTTTAACG
Erwinia carotovora subsp. atroseptica SCRI1043
Position: -239
Score: 5.58887
Sequence: ATATAAAACAGCATTTCATAT
Locus tag: ECA0357
Name: rhiA
Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
rhiA -239 5.6 ATATAAAACAGCATTTCATAT ECA0357
Salmonella typhimurium LT2
Position: -126
Score: 4.71378
Sequence: ATGTGAAACAGGGTTTCAAAA
Locus tag: STM4054
Name: rhiA
Funciton: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit
Locus tag: STM4053
Name: rhiB
Funciton: predicted rhamnogalacturonide TRAP transporter, small transmembrane subunit
Locus tag: STM4052
Name: rhiC
Funciton: predicted rhamnogalacturonide TRAP transporter, large transmembrane subunit
rhiA-rhiB-rhiC -126 4.7 ATGTGAAACAGGGTTTCAAAA STM4054