Regulon of LexA in Citrobacter koseri ATCC BAA-895
| Regulator type: | Transcription factor |
| TF locus tag: | CKO_03872 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 22 |
| - Operons | 21 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -60
Score: 5.2 Sequence: AACTGGACGTTTATACAGCA
Locus tag: CKO_00174
Name: rmuC Funciton: DNA recombination protein RmuC |
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rmuC
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DNA recombination protein RmuC
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Position: -76
Score: 5 Sequence: TATTGTATATATACCCAGCT
Locus tag: CKO_00155
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -96
Score: 5.5 Sequence: TACTGTATGACTGTACAGTA
Locus tag: CKO_04050
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -41
Score: 6 Sequence: TACTGTATATCCATACAGTA
Locus tag: CKO_02110
Name: sulA Funciton: Cell division inhibitor sulA |
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sulA
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Cell division inhibitor sulA
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Position: -35
Score: 5.8 Sequence: TACTGTATACTTAAACAGTA
Locus tag: CKO_02960
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -47
Score: 5 Sequence: AGCTGTATATACTCACAGCA
Position: -26
Score: 5.2 Sequence: AACTGTATATACACCCAGGG
Locus tag: CKO_03872
Name: lexA Funciton: LexA repressor |
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lexA
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LexA repressor
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Position: -39
Score: 5 Sequence: TCCTGTTAATCCATACAGCA
Locus tag: CKO_02181
Name: ftsK Funciton: DNA translocase FtsK |
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ftsK
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DNA translocase FtsK
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Position: -52
Score: 4.4 Sequence: TACTGTATAAAAACCCTATA
Position: -34
Score: 5.2 Sequence: TACTGTATGAATTGACAGTT
Locus tag: CKO_01754
Name: ydjM Funciton: membrane-bound metal-dependent hydrolase |
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ydjM
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membrane-bound metal-dependent hydrolase
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Position: -68
Score: 5.6 Sequence: TACTGTATAAAAAACCAGTT
Position: -46
Score: 5.1 Sequence: TACTGTATGTAATCACAGTC
Position: -28
Score: 4.5 Sequence: TCATGGTTTTTCATACAGGA
Locus tag: CKO_03938
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -93
Score: 5.4 Sequence: CACTGTTTTTTCATCCAGTA
Locus tag: CKO_02348
Name: uvrB Funciton: Excinuclease ABC subunit B |
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uvrB
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Excinuclease ABC subunit B
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Position: -39
Score: 5.9 Sequence: AACTGTATAAATACACAGTA
Locus tag: CKO_02002
Name: dinI Funciton: DNA damage-inducible protein |
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dinI
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DNA damage-inducible protein
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Position: -70
Score: 4.6 Sequence: GGCTGGATATCTATCCAGCC
Locus tag: CKO_01099
Name: ruvA Funciton: Holliday junction helicase subunit A |
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ruvA
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Holliday junction helicase subunit A
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Position: -38
Score: 4.8 Sequence: TGCTGTACATAATTACAGGT
Locus tag: CKO_01118
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Position: -168
Score: 5.3 Sequence: ACCTGAATGGATATACAGTA
Locus tag: CKO_03842
Name: ssb Funciton: single-strand binding protein |
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ssb
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single-strand binding protein
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Position: -34
Score: 4.8 Sequence: TAGTGGCTGTTTATACAGTA
Locus tag: CKO_02329
Name: dinG Funciton: ATP-dependent helicase DinG/Rad3 |
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dinG
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ATP-dependent helicase DinG/Rad3
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Position: -70
Score: 4.7 Sequence: TGCTGTTTTTATAAACAACG
Locus tag: CKO_04467
Name: null Funciton: DNA glycosylase, G/U mismatch specific |
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DNA glycosylase, G/U mismatch specific
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Position: -25
Score: 6.1 Sequence: TACTGTATAaAaATACAGTA
Locus tag: CKO_01890
Name: dinI Funciton: DNA damage-inducible protein |
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dinI
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DNA damage-inducible protein
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Position: -102
Score: 5.3 Sequence: TACTGTATATCCATTCAGGT
Locus tag: CKO_03843
Name: uvrA Funciton: excinuclease ABC subunit A |
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uvrA
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excinuclease ABC subunit A
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Position: -73
Score: 4.7 Sequence: ACCTGTATAAAACCACAGCA
Locus tag: CKO_03322
Name: polB Funciton: DNA polymerase II (EC 2.7.7.7) |
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polB
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DNA polymerase II (EC 2.7.7.7)
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Position: -38
Score: 5.9 Sequence: TACTGTATATATAATCAGTA
Locus tag: CKO_01842
Name: umuD Funciton: DNA polymerase V, subunit UmuD
Locus tag: CKO_01841
Name: umuC Funciton: DNA polymerase V, subunit UmuC |
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umuD
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DNA polymerase V, subunit UmuD
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umuC
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DNA polymerase V, subunit UmuC
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Position: -157
Score: 5.7 Sequence: TGCTGTGTTTATATACAGTA
Locus tag: CKO_00775
Name: sbmC Funciton: DNA gyrase inhibitor |
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sbmC
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DNA gyrase inhibitor
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |