Regulon of NtrC in Citrobacter koseri ATCC BAA-895
| Regulator type: | Transcription factor |
| TF locus tag: | CKO_03144 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -40
Score: 6 Sequence: TGCACTAAATTGGTGCA
Locus tag: CKO_03143
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: CKO_03144
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -202
Score: 5.9 Sequence: TGCACCAACATGGTGCT
Position: -170
Score: 5.4 Sequence: AGCACTATATTGGTGCA
Locus tag: CKO_03140
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -151
Score: 3.5 Sequence: TGCACAAATGTTGATCA
Locus tag: CKO_01526
Name: CKO_01526 Funciton: Predicted transcriptional regulator, RpiR family
Locus tag: CKO_01525
Name: ddpX Funciton: D-alanyl-D-alanine dipeptidase (EC 3.4.13.-)
Locus tag: CKO_01524
Name: ddpA Funciton: Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
Locus tag: CKO_01523
Name: ddpB Funciton: Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2)
Locus tag: CKO_01522
Name: ddpC Funciton: Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2)
Locus tag: CKO_01521
Name: ddpD Funciton: Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2)
Locus tag: CKO_01520
Name: ddpF Funciton: Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2) |
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CKO_01526
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Predicted transcriptional regulator, RpiR family
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ddpX
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D-alanyl-D-alanine dipeptidase (EC 3.4.13.-)
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ddpA
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Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
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ddpB
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Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2)
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ddpC
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Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2)
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ddpD
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Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2)
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ddpF
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Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2)
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Position: -147
Score: 5.3 Sequence: TGCACCGTTATAGTGCG
Locus tag: CKO_02708
Name: glnK Funciton: nitrogen regulatory protein P-II
Locus tag: CKO_02707
Name: amtB Funciton: Ammonium transporter |
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glnK
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nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -169
Score: 4.8 Sequence: AGCACCCAAACAGTGCA
Position: -140
Score: 4.2 Sequence: TGCCTCTAAACGGTGCG
Locus tag: CKO_02507
Name: gltI Funciton: Glutamate-aspartate ABC transporter, substrate-binding component
Locus tag: CKO_02509
Name: gltJ Funciton: Glutamate-aspartate ABC transporter, transmembrane component 1
Locus tag: CKO_02510
Name: gltK Funciton: Glutamate-aspartate ABC transporter, transmembrane component 2
Locus tag: CKO_02511
Name: gltL Funciton: Glutamate-aspartate ABC transporter, ATP-binding component |
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gltI
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Glutamate-aspartate ABC transporter, substrate-binding component
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gltJ
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Glutamate-aspartate ABC transporter, transmembrane component 1
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gltK
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Glutamate-aspartate ABC transporter, transmembrane component 2
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gltL
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Glutamate-aspartate ABC transporter, ATP-binding component
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Position: -212
Score: 4.3 Sequence: TTAACCATCACGGTGCG
Position: -183
Score: 5.8 Sequence: TGCACCATCATGGTGCG
Locus tag: CKO_00478
Name: hisJ Funciton: Histidine ABC transporter, substrate-binding component
Locus tag: CKO_00479
Name: hisQ Funciton: Histidine ABC transporter, transmembrane component 1
Locus tag: CKO_00480
Name: hisM Funciton: Histidine ABC transporter, transmembrane component 2
Locus tag: CKO_00481
Name: hisP Funciton: Histidine ABC transporter, ATP-binding component |
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hisJ
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Histidine ABC transporter, substrate-binding component
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hisQ
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Histidine ABC transporter, transmembrane component 1
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hisM
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Histidine ABC transporter, transmembrane component 2
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hisP
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Histidine ABC transporter, ATP-binding component
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Position: -172
Score: 5.1 Sequence: TGCACTAAATCAGTGCC
Position: -159
Score: 5.6 Sequence: TGCCCCAAAACGGTGCA
Locus tag: CKO_02311
Name: glnH Funciton: Glutamine ABC transporter, substrate-binding component
Locus tag: CKO_02312
Name: glnP Funciton: Glutamine ABC transporter, transmembrane component |
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glnH
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Glutamine ABC transporter, substrate-binding component
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glnP
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Glutamine ABC transporter, transmembrane component
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Position: -206
Score: 4.8 Sequence: TGCGCCATTCTGGTGCA
Locus tag: CKO_00955
Name: nac Funciton: Nitrogen assimilation transcriptional regulator, LysR family |
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nac
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Nitrogen assimilation transcriptional regulator, LysR family
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Position: -53
Score: 4.6 Sequence: CGCACTTTTATGGTGCG
Locus tag: CKO_02252
Name: potG Funciton: Putrescine ABC transporter, ATP-binding component
Locus tag: CKO_02251
Name: potH Funciton: Putrescine ABC transporter, transmembrane component 2
Locus tag: CKO_02250
Name: potI Funciton: Putrescine ABC transporter, transmembrane component 1 |
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potG
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Putrescine ABC transporter, ATP-binding component
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potH
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Putrescine ABC transporter, transmembrane component 2
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potI
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Putrescine ABC transporter, transmembrane component 1
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Position: -84
Score: 4.6 Sequence: CGCACCGTTCTGGTGCG
Locus tag: CKO_04486
Name: ygjG Funciton: Putrescine aminotransferase (EC 2.6.1.82) |
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ygjG
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Putrescine aminotransferase (EC 2.6.1.82)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |