Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Citrobacter koseri ATCC BAA-895

Properties
Regulator type: Transcription factor
TF locus tag: CKO_04777
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Enterobacteriales
Statistics of regulated genes:
- Genes 367
- Operons 204
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2301 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -160
Score: 3.1
Sequence: TACATTGACGTACTGCATGTAT
Locus tag: CKO_04777
Name: crp
Funciton: cyclic AMP receptor protein
CKO_04777
crp
cyclic AMP receptor protein
Position: -263
Score: 4.8
Sequence: ATAAGTGACCGAAATCACACTT
Position: -241
Score: 3.9
Sequence: AAAAATGATCTAAAACAAAAAT
Locus tag: CKO_00446
Name: fadL
Funciton: Long-chain fatty acid transport protein
CKO_00446
fadL
Long-chain fatty acid transport protein
Position: -37
Score: 5.3
Sequence: ATATGTGATCTAAATCACTTTT
Locus tag: CKO_04651
Name: aaeR
Funciton: LysR-family transcriptional regulator
CKO_04651
aaeR
LysR-family transcriptional regulator
Position: -101
Score: 4.3
Sequence: TTGCGTGATCTGCCGCGCAAAT
Locus tag: CKO_03816
Name: acs
Funciton: acetyl-coenzyme A synthetase
Locus tag: CKO_03817
Name: yjcH
Funciton: membrane protein
Locus tag: CKO_03818
Name: actP
Funciton: acetate permease
CKO_03816
acs
acetyl-coenzyme A synthetase
CKO_03817
yjcH
membrane protein
CKO_03818
actP
acetate permease
Position: -290
Score: 3.9
Sequence: ATTGGTGATGTTTTGCGCAATG
Position: -105
Score: 5
Sequence: AATTGCGATCTAAATCAAATTT
Locus tag: CKO_04485
Name: aer
Funciton: aerotaxis sensor receptor, senses cellular redox state or proton motive force
CKO_04485
aer
aerotaxis sensor receptor, senses cellular redox state or proton motive force
Position: -137
Score: 4.7
Sequence: TTTTATGAAGCACATCACAAAA
Position: -91
Score: 3.9
Sequence: ACATGTGATTGTTATTACTTAA
Locus tag: CKO_01448
Name: aldA
Funciton: aldehyde dehydrogenase A
CKO_01448
aldA
aldehyde dehydrogenase A
Position: -125
Score: 3.6
Sequence: TTTTGATATCCATCTCTAAAAA
Locus tag: CKO_04332
Name: ansB
Funciton: periplasmic L-asparaginase II
CKO_04332
ansB
periplasmic L-asparaginase II
Position: -255
Score: 3.9
Sequence: TATTGTGAATGCGTGTACAGAA
Position: -224
Score: 3.7
Sequence: GTGTGTGTGGTTTATCACACAT
Locus tag: CKO_03845
Name: aphA
Funciton: acid phosphatase/phosphotransferase
CKO_03845
aphA
acid phosphatase/phosphotransferase
Position: -132
Score: 3.9
Sequence: ATATTTGCACGGCGTCACACTT
Locus tag: CKO_03319
Name: araB
Funciton: L-ribulokinase
Locus tag: CKO_03320
Name: araA
Funciton: L-arabinose isomerase
Locus tag: CKO_03321
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase
CKO_03319
araB
L-ribulokinase
CKO_03320
araA
L-arabinose isomerase
CKO_03321
araD
L-ribulose-5-phosphate 4-epimerase
Position: -230
Score: 4.4
Sequence: AAGTGTGACGCCGTGCAAATAT
Locus tag: CKO_03318
Name: araC
Funciton: DNA-binding transcriptional dual regulator
CKO_03318
araC
DNA-binding transcriptional dual regulator
Position: -164
Score: 4
Sequence: CGGTGTGATGCCGCTCTCCTAT
Locus tag: CKO_01050
Name: araF
Funciton: L-arabinose-binding periplasmic protein
Locus tag: CKO_01051
Name: araG
Funciton: L-arabinose transporter ATP-binding protein
Locus tag: CKO_01052
Name: araH
Funciton: L-arabinose transporter permease protein
CKO_01050
araF
L-arabinose-binding periplasmic protein
CKO_01051
araG
L-arabinose transporter ATP-binding protein
CKO_01052
araH
L-arabinose transporter permease protein
Position: -27
Score: 4.3
Sequence: TAATGTATTTTTATTCACAAAT
Locus tag: CKO_03037
Name: argE
Funciton: acetylornithine deacetylase
CKO_03037
argE
acetylornithine deacetylase
Position: -115
Score: 4.3
Sequence: AGGTGTGAAACGCCTCGCATTT
Position: -64
Score: 4.3
Sequence: TATTGTGATGCCCATCACTTCC
Locus tag: CKO_01728
Name: aroH
Funciton: phospho-2-dehydro-3-deoxyheptonate aldolase
CKO_01728
aroH
phospho-2-dehydro-3-deoxyheptonate aldolase
Position: -179
Score: 4.4
Sequence: ACAAGTGATCATTCTCACAATT
Locus tag: CKO_04070
Name: ascF
Funciton: hypothetical protein
Locus tag: CKO_04071
Name: ascB
Funciton: 6-phospho-beta-glucosidase
CKO_04070
ascF
hypothetical protein
CKO_04071
ascB
6-phospho-beta-glucosidase
Position: -54
Score: 4.2
Sequence: AGCGGTGACCTATTTCACAAAA
Locus tag: CKO_03696
Name: aspA
Funciton: aspartate ammonia-lyase
Locus tag: CKO_03697
Name: dcuA
Funciton: anaerobic C-4-dicarboxylate symporter
CKO_03696
aspA
aspartate ammonia-lyase
CKO_03697
dcuA
anaerobic C-4-dicarboxylate symporter
Position: -262
Score: 4.7
Sequence: ATATGTGATCCGAAGCACGCTT
Locus tag: CKO_00079
Name: atpI
Funciton: ATP synthase subunit I
Locus tag: CKO_00078
Name: atpB
Funciton: ATP synthase subunit A
Locus tag: CKO_00077
Name: atpE
Funciton: ATP synthase subunit C
Locus tag: CKO_00076
Name: atpF
Funciton: ATP synthase subunit B
Locus tag: CKO_00075
Name: atpH
Funciton: ATP synthase subunit D
Locus tag: CKO_00073
Name: atpA
Funciton: ATP synthase subunit A
Locus tag: CKO_00071
Name: atpG
Funciton: ATP synthase subunit C
Locus tag: CKO_00070
Name: atpD
Funciton: ATP synthase subunit B
Locus tag: CKO_00069
Name: atpC
Funciton: ATP synthase epsilon subunit
CKO_00079
atpI
ATP synthase subunit I
CKO_00078
atpB
ATP synthase subunit A
CKO_00077
atpE
ATP synthase subunit C
CKO_00076
atpF
ATP synthase subunit B
CKO_00075
atpH
ATP synthase subunit D
CKO_00073
atpA
ATP synthase subunit A
CKO_00071
atpG
ATP synthase subunit C
CKO_00070
atpD
ATP synthase subunit B
CKO_00069
atpC
ATP synthase epsilon subunit
Position: -168
Score: 3.8
Sequence: TTTTGTGAATGTTTTATCGTAA
Locus tag: CKO_00980
Name: yedJ
Funciton: hypothetical protein
CKO_00980
yedJ
hypothetical protein
Position: -103
Score: 4.6
Sequence: CTTAGTGATCTACTTCACCTTT
Locus tag: CKO_00333
Name: b2462
Funciton: putative carboxysome structural protein, ethanol utilization
Locus tag: CKO_00334
Name: eutP
Funciton: putative ethanolamine utilization protein
Locus tag: CKO_00335
Name: eutQ
Funciton: hypothetical protein
Locus tag: CKO_00336
Name: eutT
Funciton: predicted cobalamin adenosyltransferase in ethanolamine utilization
Locus tag: CKO_00337
Name: eutI
Funciton: predicted phosphotransacetylase subunit
Locus tag: CKO_00338
Name: cchA
Funciton: detox protein
Locus tag: CKO_00339
Name: cchB
Funciton: hypothetical protein
Locus tag: CKO_00340
Name: eutE
Funciton: ethanolamine utilization protein
Locus tag: CKO_00341
Name: eutJ
Funciton: ethanolamine utilization protein
Locus tag: CKO_00342
Name: eutG
Funciton: ethanolamine utilization enzyme
CKO_00333
b2462
putative carboxysome structural protein, ethanol utilization
CKO_00334
eutP
putative ethanolamine utilization protein
CKO_00335
eutQ
hypothetical protein
CKO_00336
eutT
predicted cobalamin adenosyltransferase in ethanolamine utilization
CKO_00337
eutI
predicted phosphotransacetylase subunit
CKO_00338
cchA
detox protein
CKO_00339
cchB
hypothetical protein
CKO_00340
eutE
ethanolamine utilization protein
CKO_00341
eutJ
ethanolamine utilization protein
CKO_00342
eutG
ethanolamine utilization enzyme
Position: -128
Score: 4.3
Sequence: ATTTGCGATGCGTCGCGCATTT
Position: -78
Score: 4.8
Sequence: CAATGAGATTTGGATCACATAT
Locus tag: CKO_00646
Name: cdd
Funciton: cytidine deaminase
CKO_00646
cdd
cytidine deaminase
Position: -81
Score: 4.1
Sequence: TTCCGTGAGATTTCTCACAAAG
Locus tag: CKO_01676
Name: cfa
Funciton: cyclopropane fatty acyl phospholipid synthase
CKO_01676
cfa
cyclopropane fatty acyl phospholipid synthase
Position: -188
Score: 4.1
Sequence: AAATGTGAGAGGGGTCATAACA
Locus tag: CKO_01763
Name: chbB
Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Locus tag: CKO_01762
Name: chbC
Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIC component
Locus tag: CKO_01761
Name: chbA
Funciton: N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
Locus tag: CKO_01760
Name: chbR
Funciton: DNA-binding transcriptional dual regulator
Locus tag: CKO_01759
Name: chbF
Funciton: 6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
Locus tag: CKO_01758
Name: chbG
Funciton: hypothetical protein
CKO_01763
chbB
N,N'-diacetylchitobiose-specific PTS system , EIIB component
CKO_01762
chbC
N,N'-diacetylchitobiose-specific PTS system , EIIC component
CKO_01761
chbA
N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
CKO_01760
chbR
DNA-binding transcriptional dual regulator
CKO_01759
chbF
6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
CKO_01758
chbG
hypothetical protein
Position: -95
Score: 4.4
Sequence: CTTCGTGATGGTGATCATAATT
Locus tag: CKO_05006
Name: CKO_05006
Funciton: Xylose isomerase domain protein TIM barrel
Locus tag: CKO_05007
Name: CKO_05007
Funciton: PfkB domain protein
Locus tag: CKO_05008
Name: CKO_05008
Funciton: major facilitator superfamily MFS_1
Locus tag: CKO_05009
Name: tkrA
Funciton: 2-hydroxyacid dehydrogenase
CKO_05006
CKO_05006
Xylose isomerase domain protein TIM barrel
CKO_05007
CKO_05007
PfkB domain protein
CKO_05008
CKO_05008
major facilitator superfamily MFS_1
CKO_05009
tkrA
2-hydroxyacid dehydrogenase
Position: -164
Score: 4
Sequence: AAATTTGAAGCAGTTAACGCTA
Position: -135
Score: 4.2
Sequence: TAATGTGACAGATGTCGCGGAT
Locus tag: CKO_02199
Name: clpS
Funciton: ATP-dependent Clp protease adaptor protein
Locus tag: CKO_02198
Name: clpA
Funciton: ATP-dependent CLP protease ATP-binding subunit
CKO_02199
clpS
ATP-dependent Clp protease adaptor protein
CKO_02198
clpA
ATP-dependent CLP protease ATP-binding subunit
Position: -25
Score: 4.2
Sequence: TTTTGTGTTTCAGATCTAAAAA
Locus tag: CKO_03616
Name: cpdB
Funciton: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
CKO_03616
cpdB
2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Position: -210
Score: 3.9
Sequence: ATCCGCGACATCTGTCACATTA
Position: -181
Score: 4
Sequence: TAGCGTTAACTGCTTCAAATTT
Locus tag: CKO_02200
Name: cspD
Funciton: cold shock-like protein
CKO_02200
cspD
cold shock-like protein
Position: -21
Score: 4.3
Sequence: TAACGCGATATTTATCACTTTT
Locus tag: CKO_02534
Name: cspE
Funciton: cold shock protein E
CKO_02534
cspE
cold shock protein E
Position: -134
Score: 4.3
Sequence: TGAAGTGATCCAGTTAACAATG
Locus tag: CKO_02563
Name: cstA2
Funciton: carbon starvation protein
Locus tag: CKO_02562
Name: ybdD
Funciton: hypothetical protein
CKO_02563
cstA2
carbon starvation protein
CKO_02562
ybdD
hypothetical protein
Position: -199
Score: 4.4
Sequence: TTTTGTGAGCTAATTCGCGTTG
Locus tag: CKO_03624
Name: cycA2
Funciton: D-alanine/D-serine/glycine permease
CKO_03624
cycA2
D-alanine/D-serine/glycine permease
Position: -178
Score: 4.1
Sequence: TTTTTAGATCTGAAACACAAAA
Locus tag: CKO_03615
Name: cysQ
Funciton: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
CKO_03615
cysQ
PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Position: -129
Score: 3.8
Sequence: AAATTAAATATCCATCACACTT
Locus tag: CKO_03060
Name: cytR
Funciton: transcriptional repressor
CKO_03060
cytR
transcriptional repressor
Position: -107
Score: 4.5
Sequence: AGATGTGAGGTGCGTCACCATA
Locus tag: CKO_01193
Name: dadA
Funciton: D-amino acid dehydrogenase small subunit
Locus tag: CKO_01194
Name: dadX
Funciton: alanine racemase
CKO_01193
dadA
D-amino acid dehydrogenase small subunit
CKO_01194
dadX
alanine racemase
Position: -145
Score: 4
Sequence: TTGTGCGAGCCAGCTCAAAGTT
Locus tag: CKO_04970
Name: dctA
Funciton: C4-dicarboxylate transport protein
CKO_04970
dctA
C4-dicarboxylate transport protein
Position: -103
Score: 3.9
Sequence: CTTTTTGATTGCCATCACCTTC
Position: -48
Score: 4.4
Sequence: TACTTTGAGCCGGTTCACACTT
Locus tag: CKO_04559
Name: deaD
Funciton: ATP-independent RNA helicase
CKO_04559
deaD
ATP-independent RNA helicase
Position: -134
Score: 4.2
Sequence: TTATTTGAAGTGGATCTCGTTA
Position: -81
Score: 4.2
Sequence: AACTGTGATGTATATCGAAGTG
Locus tag: CKO_03410
Name: deoC
Funciton: 2-deoxyribose-5-phosphate aldolase
Locus tag: CKO_03409
Name: deoA
Funciton: thymidine phosphorylase
Locus tag: CKO_03408
Name: deoB
Funciton: phosphopentomutase
Locus tag: CKO_03407
Name: deoD
Funciton: purine nucleoside phosphorylase
CKO_03410
deoC
2-deoxyribose-5-phosphate aldolase
CKO_03409
deoA
thymidine phosphorylase
CKO_03408
deoB
phosphopentomutase
CKO_03407
deoD
purine nucleoside phosphorylase
Position: -121
Score: 3.8
Sequence: TTATGTGAACGGAATCCCCATC
Locus tag: CKO_04994
Name: dppA
Funciton: dipeptide ABC transporter, substrate-binding protein
Locus tag: CKO_04993
Name: dppB
Funciton: dipeptide ABC transporter, permease protein
Locus tag: CKO_04992
Name: dppC
Funciton: dipeptide transporter
Locus tag: CKO_04991
Name: dppD
Funciton: dipeptide transporter ATP-binding subunit
Locus tag: CKO_04990
Name: dppF
Funciton: dipeptide transporter ATP-binding subunit
CKO_04994
dppA
dipeptide ABC transporter, substrate-binding protein
CKO_04993
dppB
dipeptide ABC transporter, permease protein
CKO_04992
dppC
dipeptide transporter
CKO_04991
dppD
dipeptide transporter ATP-binding subunit
CKO_04990
dppF
dipeptide transporter ATP-binding subunit
Position: -32
Score: 3.9
Sequence: AAGGGTGATTTGCATCCAATAA
Locus tag: CKO_00019
Name: dsdC
Funciton: DNA-binding transcriptional dual regulator
CKO_00019
dsdC
DNA-binding transcriptional dual regulator
Position: -124
Score: 4
Sequence: TTATTGGATGCAAATCACCCTT
Locus tag: CKO_00020
Name: dsdX
Funciton: DsdX permease
Locus tag: CKO_00021
Name: dsdA
Funciton: D-serine dehydratase
CKO_00020
dsdX
DsdX permease
CKO_00021
dsdA
D-serine dehydratase
Position: -212
Score: 3.7
Sequence: AAATGAGAAGTTACGCAAAATT
Locus tag: CKO_04672
Name: dusB
Funciton: tRNA-dihydrouridine synthase B
Locus tag: CKO_04673
Name: fis
Funciton: DNA-binding protein Fis
CKO_04672
dusB
tRNA-dihydrouridine synthase B
CKO_04673
fis
DNA-binding protein Fis
Position: -213
Score: 4.8
Sequence: AAGTGTGATGCAGGTCAGATAA
Locus tag: CKO_04297
Name: epd
Funciton: D-erythrose 4-phosphate dehydrogenase
Locus tag: CKO_04296
Name: pgk
Funciton: phosphoglycerate kinase
CKO_04297
epd
D-erythrose 4-phosphate dehydrogenase
CKO_04296
pgk
phosphoglycerate kinase
Position: -122
Score: 3.7
Sequence: TTTTTTGATCAAAATCAGCATC
Position: -66
Score: 4.4
Sequence: AAATGTGAACAACATCACGCAG
Locus tag: CKO_01286
Name: CKO_01286
Funciton: hypothetical protein
CKO_01286
CKO_01286
hypothetical protein
Position: -250
Score: 5.2
Sequence: ATTTGTGATGTCACTCACCTTT
Locus tag: CKO_04495
Name: exuT
Funciton: Hexuronate transporter
CKO_04495
exuT
Hexuronate transporter
Position: -113
Score: 4.3
Sequence: TTTTTTGAATCCCATCACAATC
Locus tag: CKO_04487
Name: fadH
Funciton: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
CKO_04487
fadH
2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Position: -179
Score: 4
Sequence: ATTGGTGATCCATCAAACAATA
Position: -122
Score: 4.4
Sequence: ATTAGTGAGATGCTTAACAATA
Locus tag: CKO_03341
Name: fixA
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: CKO_03340
Name: CKO_03340
Funciton: hypothetical protein
Locus tag: CKO_03339
Name: CKO_03339
Funciton: hypothetical protein
Locus tag: CKO_03338
Name: fixX
Funciton: ferredoxin-like protein
Locus tag: CKO_03337
Name: CKO_03337
Funciton: hypothetical protein
CKO_03341
fixA
electron transfer flavoprotein, beta subunit
CKO_03340
CKO_03340
hypothetical protein
CKO_03339
CKO_03339
hypothetical protein
CKO_03338
fixX
ferredoxin-like protein
CKO_03337
CKO_03337
hypothetical protein
Position: -283
Score: 5.9
Sequence: TTATGTGATCTGGATCACATAT
Locus tag: CKO_01056
Name: flhD
Funciton: DNA-binding transcriptional dual regulator with FlhC
Locus tag: CKO_01057
Name: flhC
Funciton: DNA-binding transcriptional dual regulator with FlhD
CKO_01056
flhD
DNA-binding transcriptional dual regulator with FlhC
CKO_01057
flhC
DNA-binding transcriptional dual regulator with FlhD
Position: -198
Score: 3.6
Sequence: TATTTTTATTTGGATAATCAAA
Position: -120
Score: 4.4
Sequence: AGATATGATCTATATCAAATTC
Locus tag: CKO_02167
Name: focA
Funciton: formate transporter
Locus tag: CKO_02168
Name: pflB
Funciton: formate acetyltransferase
CKO_02167
focA
formate transporter
CKO_02168
pflB
formate acetyltransferase
Position: -98
Score: 3.8
Sequence: TTATGTGCGCCGCCTCACGCAC
Locus tag: CKO_00638
Name: folE
Funciton: GTP cyclohydrolase I
Locus tag: CKO_00639
Name: yeiB
Funciton: conserved inner membrane protein
CKO_00638
folE
GTP cyclohydrolase I
CKO_00639
yeiB
conserved inner membrane protein
Position: -50
Score: 4.1
Sequence: AAGTGTGCTTTATCTCTAAATT
Locus tag: CKO_00613
Name: fruB
Funciton: PTS system, fructose-specific IIA/FPr component
Locus tag: CKO_00614
Name: fruK
Funciton: 1-phosphofructokinase
Locus tag: CKO_00615
Name: fruA
Funciton: PTS system, fructose-specific IIBC component
CKO_00613
fruB
PTS system, fructose-specific IIA/FPr component
CKO_00614
fruK
1-phosphofructokinase
CKO_00615
fruA
PTS system, fructose-specific IIBC component
Position: -202
Score: 3.9
Sequence: AATTGCGAGACACTTCACAAGT
Position: -147
Score: 4.3
Sequence: AGTTATGAGGCGGATCGCATTT
Locus tag: CKO_03045
Name: frwC
Funciton: hypothetical protein
Locus tag: CKO_03044
Name: frwB
Funciton: PTS system fructose-like IIB component 1
CKO_03045
frwC
hypothetical protein
CKO_03044
frwB
PTS system fructose-like IIB component 1
Position: -102
Score: 3.8
Sequence: AATTGAGACTTCCTTCAAACAC
Locus tag: CKO_02670
Name: fsr
Funciton: fosmidomycin resistance protein
CKO_02670
fsr
fosmidomycin resistance protein
Position: -144
Score: 4.7
Sequence: TTAATTGATGCGTATCACAAAA
Locus tag: CKO_04159
Name: fucA
Funciton: L-fuculose phosphate aldolase
Locus tag: CKO_04157
Name: fucO
Funciton: L-1,2-propanediol oxidoreductase
CKO_04159
fucA
L-fuculose phosphate aldolase
CKO_04157
fucO
L-1,2-propanediol oxidoreductase
Position: -219
Score: 5
Sequence: TAAAGTGATGATAATCACATAA
Position: -179
Score: 4.8
Sequence: AAATGTGACCACCATCATATTA
Locus tag: CKO_04160
Name: fucP
Funciton: L-fucose permease
Locus tag: CKO_04161
Name: fucI
Funciton: L-fucose isomerase
Locus tag: CKO_04162
Name: CKO_04162
Funciton: hypothetical protein
Locus tag: CKO_04163
Name: fucK
Funciton: L-fuculokinase
CKO_04160
fucP
L-fucose permease
CKO_04161
fucI
L-fucose isomerase
CKO_04162
CKO_04162
hypothetical protein
CKO_04163
fucK
L-fuculokinase
Position: -156
Score: 4.1
Sequence: TTTTGTGAAATAGGTCACCGCT
Locus tag: CKO_03695
Name: fxsA
Funciton: suppressor of F plamsid exlusion of phage T7
CKO_03695
fxsA
suppressor of F plamsid exlusion of phage T7
Position: -36
Score: 3.7
Sequence: TAATATATTCCATGTCACACTT
Locus tag: CKO_02376
Name: galE2
Funciton: UDP-galactose-4-epimerase
Locus tag: CKO_02377
Name: galT
Funciton: galactose-1-phosphate uridylyltransferase
Locus tag: CKO_02378
Name: galK
Funciton: galactokinase
Locus tag: CKO_02379
Name: galM
Funciton: aldose 1-epimerase
CKO_02376
galE2
UDP-galactose-4-epimerase
CKO_02377
galT
galactose-1-phosphate uridylyltransferase
CKO_02378
galK
galactokinase
CKO_02379
galM
aldose 1-epimerase
Position: -83
Score: 5.3
Sequence: TAACGTGATTCGAATCACATAT
Locus tag: CKO_04318
Name: galP
Funciton: sugar transporter
CKO_04318
galP
sugar transporter
Position: -226
Score: 5
Sequence: AATCGTGATCGGAATCACGTTT
Locus tag: CKO_01800
Name: gapA
Funciton: glyceraldehyde-3-phosphate dehydrogenase
Locus tag: CKO_01801
Name: yeaD
Funciton: Aldose 1-epimerase
CKO_01800
gapA
glyceraldehyde-3-phosphate dehydrogenase
CKO_01801
yeaD
Aldose 1-epimerase
Position: -54
Score: 4
Sequence: AGTTGTTCTCTTTAACACATTT
Locus tag: CKO_04527
Name: garD
Funciton: D-galactarate dehydratase
CKO_04527
garD
D-galactarate dehydratase
Position: -218
Score: 3.9
Sequence: TTTTGTTATCTCATTGAAAATT
Position: -104
Score: 4.1
Sequence: TTTTGTGCAAGTTTTCTCATTA
Locus tag: CKO_02295
Name: CKO_02295
Funciton: hypothetical protein
CKO_02295
CKO_02295
hypothetical protein
Position: -116
Score: 4.5
Sequence: TTATGTGATGCAGATCGATATT
Locus tag: CKO_00412
Name: glk
Funciton: glucokinase
CKO_00412
glk
glucokinase
Position: -250
Score: 4.2
Sequence: CTTTGTGATCGCTTTCACGGAG
Locus tag: CKO_03140
Name: glnA
Funciton: glutamine synthetase
CKO_03140
glnA
glutamine synthetase
Position: -163
Score: 4.7
Sequence: TAATGTGAATTACAGCACAGAT
Locus tag: CKO_00536
Name: glpA
Funciton: sn-glycerol-3-phosphate dehydrogenase subunit A
Locus tag: CKO_00535
Name: glpB
Funciton: Glycerol-3-phosphate dehydrogenase subunit B
Locus tag: CKO_00534
Name: glpC
Funciton: anaerobic glycerol-3-phosphate dehydrogenase subunit C
CKO_00536
glpA
sn-glycerol-3-phosphate dehydrogenase subunit A
CKO_00535
glpB
Glycerol-3-phosphate dehydrogenase subunit B
CKO_00534
glpC
anaerobic glycerol-3-phosphate dehydrogenase subunit C
Position: -116
Score: 4.5
Sequence: TAATGTTATATGTATCACTCTA
Locus tag: CKO_04845
Name: glpD
Funciton: glycerol-3-phosphate dehydrogenase
CKO_04845
glpD
glycerol-3-phosphate dehydrogenase
Position: -108
Score: 4.6
Sequence: TAGAGTGATACATATAACATTA
Locus tag: CKO_04844
Name: glpE
Funciton: thiosulfate sulfurtransferase
CKO_04844
glpE
thiosulfate sulfurtransferase
Position: -221
Score: 3.6
Sequence: TTGTTTGATTTCGCGCATAATC
Position: -181
Score: 4
Sequence: AAACGTGATTTCGTGCGCTTTT
Position: -132
Score: 4.8
Sequence: ATCTGTGCTGTAATTCACATTA
Locus tag: CKO_00537
Name: glpT
Funciton: glycerol-3-phosphate transporter
Locus tag: CKO_00538
Name: glpQ
Funciton: glycerophosphoryl diester phosphodiesterase
CKO_00537
glpT
glycerol-3-phosphate transporter
CKO_00538
glpQ
glycerophosphoryl diester phosphodiesterase
Position: -67
Score: 3.7
Sequence: AAATGTTAACAAACACGCATAA
Locus tag: CKO_02507
Name: glnH2
Funciton: glutamate and aspartate transporter subunit
Locus tag: CKO_02509
Name: gltJ
Funciton: glutamate/aspartate ABC transporter, permease protein
Locus tag: CKO_02510
Name: gltK
Funciton: glutamate/aspartate ABC transporter, permease protein
Locus tag: CKO_02511
Name: gltL
Funciton: ABC transporter-related protein
CKO_02507
glnH2
glutamate and aspartate transporter subunit
CKO_02509
gltJ
glutamate/aspartate ABC transporter, permease protein
CKO_02510
gltK
glutamate/aspartate ABC transporter, permease protein
CKO_02511
gltL
ABC transporter-related protein
Position: -172
Score: 4.8
Sequence: AAATTTGAAGTAGCTCACACTT
Locus tag: CKO_04856
Name: gntK
Funciton: gluconate kinase 1
Locus tag: CKO_04855
Name: gntU
Funciton: Low-affinity gluconate transporter (Gluconate permease)
CKO_04856
gntK
gluconate kinase 1
CKO_04855
gntU
Low-affinity gluconate transporter (Gluconate permease)
Position: -220
Score: 4.2
Sequence: AAACGTGATCAATTTAACACCT
Locus tag: CKO_00147
Name: hemC
Funciton: porphobilinogen deaminase
Locus tag: CKO_00146
Name: hemD
Funciton: uroporphyrinogen-III synthase
Locus tag: CKO_00145
Name: hemX
Funciton: uroporphyrinogen III methylase
Locus tag: CKO_00144
Name: hemY
Funciton: HemY protein
CKO_00147
hemC
porphobilinogen deaminase
CKO_00146
hemD
uroporphyrinogen-III synthase
CKO_00145
hemX
uroporphyrinogen III methylase
CKO_00144
hemY
HemY protein
Position: -164
Score: 4
Sequence: TTTTGTGCGGTTCTTCAAGAAA
Locus tag: CKO_01316
Name: hns
Funciton: global DNA-binding transcriptional dual regulator H-NS
CKO_01316
hns
global DNA-binding transcriptional dual regulator H-NS
Position: -135
Score: 5.3
Sequence: AAGTGTGATCGTCATCACAAAA
Locus tag: CKO_03242
Name: hpt
Funciton: hypoxanthine phosphoribosyltransferase
CKO_03242
hpt
hypoxanthine phosphoribosyltransferase
Position: -123
Score: 3.8
Sequence: AAGCGTGATTGCTGACGCAATA
Locus tag: CKO_02357
Name: hutU
Funciton: urocanate hydratase
Locus tag: CKO_02356
Name: hutH
Funciton: histidine ammonia-lyase
CKO_02357
hutU
urocanate hydratase
CKO_02356
hutH
histidine ammonia-lyase
Position: -140
Score: 5.4
Sequence: TAATGTGACATGTTTCACAAAT
Locus tag: CKO_02795
Name: idnD
Funciton: L-idonate 5-dehydrogenase
Locus tag: CKO_02793
Name: idnO
Funciton: 5-keto-D-gluconate-5-reductase
Locus tag: CKO_02792
Name: idnT
Funciton: L-idonate and D-gluconate transporter
Locus tag: CKO_02791
Name: idnR
Funciton: DNA-binding transcriptional repressor, 5-gluconate-binding
CKO_02795
idnD
L-idonate 5-dehydrogenase
CKO_02793
idnO
5-keto-D-gluconate-5-reductase
CKO_02792
idnT
L-idonate and D-gluconate transporter
CKO_02791
idnR
DNA-binding transcriptional repressor, 5-gluconate-binding
Position: -218
Score: 3.9
Sequence: TTTTGTTATCTCATTGAAAATT
Position: -104
Score: 4.1
Sequence: TTTTGTGCAAGTTTTCTCATTA
Locus tag: CKO_02295
Name: CKO_02295
Funciton: hypothetical protein
CKO_02295
CKO_02295
hypothetical protein
Position: -110
Score: 4.4
Sequence: TTGTGTGAGTCAGTTCACTCAT
Locus tag: CKO_02825
Name: lacZ
Funciton: beta-D-galactosidase
CKO_02825
lacZ
beta-D-galactosidase
Position: -56
Score: 3.6
Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: CKO_01710
Name: lpp
Funciton: major outer membrane lipoprotein
CKO_01710
lpp
major outer membrane lipoprotein
Position: -101
Score: 4.6
Sequence: TCTCGTGATTTAGATCACATCA
Locus tag: CKO_02692
Name: maa
Funciton: maltose O-acetyltransferase
CKO_02692
maa
maltose O-acetyltransferase
Position: -193
Score: 3.7
Sequence: TTTCGTGATGTCACCTGCAAAA
Position: -159
Score: 3.9
Sequence: TTATGTGCGCCAACACGCATTA
Position: -130
Score: 4.3
Sequence: TTATGCAACACAGATCACATAA
Locus tag: CKO_03881
Name: malE
Funciton: maltose ABC transporter periplasmic protein
Locus tag: CKO_03882
Name: CKO_03882
Funciton: hypothetical protein
Locus tag: CKO_03883
Name: malF
Funciton: ABC superfamily (membrane), maltose transport protein
Locus tag: CKO_03884
Name: malG
Funciton: ABC superfamily (membrane), maltose transport protein
CKO_03881
malE
maltose ABC transporter periplasmic protein
CKO_03882
CKO_03882
hypothetical protein
CKO_03883
malF
ABC superfamily (membrane), maltose transport protein
CKO_03884
malG
ABC superfamily (membrane), maltose transport protein
Position: -254
Score: 4.7
Sequence: TTATGTGATCTGTGTTGCATAA
Position: -225
Score: 3.7
Sequence: TAATGCGTGTTGGCGCACATAA
Locus tag: CKO_03880
Name: malK
Funciton: maltose/maltodextrin transporter ATP-binding protein
Locus tag: CKO_03879
Name: lamB
Funciton: maltoporin
Locus tag: CKO_03878
Name: malM
Funciton: maltose regulon periplasmic protein
CKO_03880
malK
maltose/maltodextrin transporter ATP-binding protein
CKO_03879
lamB
maltoporin
CKO_03878
malM
maltose regulon periplasmic protein
Position: -139
Score: 4
Sequence: TTAAGTGGCGGCGATCACACTT
Locus tag: CKO_04838
Name: malP
Funciton: maltodextrin phosphorylase
Locus tag: CKO_04837
Name: malQ
Funciton: 4-alpha-glucanotransferase
CKO_04838
malP
maltodextrin phosphorylase
CKO_04837
malQ
4-alpha-glucanotransferase
Position: -142
Score: 4.3
Sequence: AATTGTGACAGAGTGCAAATTC
Locus tag: CKO_04840
Name: malT
Funciton: transcriptional regulator MalT
CKO_04840
malT
transcriptional regulator MalT
Position: -270
Score: 4.7
Sequence: ATATGTGAGTAAATTCACAGTA
Locus tag: CKO_00641
Name: mglB
Funciton: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Locus tag: CKO_00642
Name: mglA
Funciton: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)
Locus tag: CKO_00643
Name: mglC
Funciton: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)
CKO_00641
mglB
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
CKO_00642
mglA
Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)
CKO_00643
mglC
Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)
Position: -164
Score: 3.8
Sequence: TTTTTTCACCCGGATCACGAAA
Locus tag: CKO_04178
Name: mltA
Funciton: membrane-bound lytic murein transglycosylase A
CKO_04178
mltA
membrane-bound lytic murein transglycosylase A
Position: -184
Score: 4.5
Sequence: AAGTGTTATTTTGATCTCAAAA
Locus tag: CKO_04055
Name: mltB
Funciton: membrane-bound lytic murein transglycosylase B
CKO_04055
mltB
membrane-bound lytic murein transglycosylase B
Position: -218
Score: 3.8
Sequence: AAAATTAATTCGTATCGCAAAT
Position: -184
Score: 5.2
Sequence: TTTTGTGATTTGAATCACCAAA
Locus tag: CKO_02486
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: CKO_02487
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: CKO_02488
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Locus tag: CKO_02489
Name: nagD
Funciton: Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
CKO_02486
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
CKO_02487
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
CKO_02488
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
CKO_02489
nagD
Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
Position: -181
Score: 4.9
Sequence: TTTGGTGATTCAAATCACAAAA
Position: -147
Score: 3.6
Sequence: ATTTGCGATACGAATTAATTTT
Locus tag: CKO_02485
Name: nagE
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
CKO_02485
nagE
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -116
Score: 4.2
Sequence: TTTAGTGAAGTAGATCGCACTC
Locus tag: CKO_04629
Name: nanA
Funciton: N-acetylneuraminate lyase (EC 4.1.3.3)
Locus tag: CKO_04628
Name: nanT
Funciton: Sialic acid transporter (permease) NanT
Locus tag: CKO_04626
Name: nanE
Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Locus tag: CKO_04625
Name: yhcI
Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: CKO_04624
Name: yhcH
Funciton: Putative sugar isomerase involved in processing of exogenous sialic acid
CKO_04629
nanA
N-acetylneuraminate lyase (EC 4.1.3.3)
CKO_04628
nanT
Sialic acid transporter (permease) NanT
CKO_04626
nanE
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
CKO_04625
yhcI
N-acetylmannosamine kinase (EC 2.7.1.60)
CKO_04624
yhcH
Putative sugar isomerase involved in processing of exogenous sialic acid
Position: -54
Score: 4.1
Sequence: AACCGTGCTGTATATCGCACAA
Locus tag: CKO_04820
Name: nudE
Funciton: ADP compounds hydrolase NudE (EC 3.6.1.-)
CKO_04820
nudE
ADP compounds hydrolase NudE (EC 3.6.1.-)
Position: -133
Score: 3.7
Sequence: AAACGTATTCCAGATCACTAAT
Position: -114
Score: 4
Sequence: AATTTTGAATCTCATCACAGCT
Position: -84
Score: 3.7
Sequence: TAGTGTGTGTTTGATCTCGTTT
Locus tag: CKO_00402
Name: nupC
Funciton: Nucleoside permease NupC
CKO_00402
nupC
Nucleoside permease NupC
Position: -166
Score: 3.9
Sequence: AAGTGTTAACTCCATCACTCTT
Position: -116
Score: 3.6
Sequence: ATATTTGTCACAGGTAACAAAA
Position: -50
Score: 3.6
Sequence: AAATGTGCCTTTTAAAACATTC
Locus tag: CKO_04339
Name: nupG
Funciton: Nucleoside permease NupG
CKO_04339
nupG
Nucleoside permease NupG
Position: -164
Score: 4
Sequence: ATGCCTGACGGAGTTCACACTT
Locus tag: CKO_02111
Name: ompA
Funciton: outer membrane protein A
CKO_02111
ompA
outer membrane protein A
Position: -82
Score: 3.9
Sequence: TAATGTGATCTGTATTGGATCA
Locus tag: CKO_01333
Name: ompW
Funciton: outer membrane protein W
CKO_01333
ompW
outer membrane protein W
Position: -194
Score: 3.8
Sequence: GATTGTGATCTATATTTAACAA
Locus tag: CKO_03416
Name: osmY
Funciton: Osmotically inducible protein OsmY
CKO_03416
osmY
Osmotically inducible protein OsmY
Position: -107
Score: 3.9
Sequence: AATCGTGATTTTGTCCAGATAC
Locus tag: CKO_04825
Name: pck
Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
CKO_04825
pck
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -73
Score: 3.6
Sequence: AAAAGTGACCTGACGCAATATT
Locus tag: CKO_01926
Name: pepT
Funciton: peptidase T
CKO_01926
pepT
peptidase T
Position: -61
Score: 4.1
Sequence: TTTTGTGACTGGCGTTACAATC
Locus tag: CKO_03893
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
CKO_03893
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -60
Score: 3.8
Sequence: TATTGTGTCAGGCATCATAAAG
Locus tag: CKO_00166
Name: pldB
Funciton: Lysophospholipase L2 (EC 3.1.1.5)
Locus tag: CKO_00167
Name: yigL
Funciton: Hydrolase (HAD superfamily)
CKO_00166
pldB
Lysophospholipase L2 (EC 3.1.1.5)
CKO_00167
yigL
Hydrolase (HAD superfamily)
Position: -215
Score: 3.7
Sequence: TTTAGTGATGTATTTAAATGTT
Position: -162
Score: 5.2
Sequence: TAACGTGACATTGATCACATTA
Locus tag: CKO_04785
Name: ppiA
Funciton: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
CKO_04785
ppiA
Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Position: -229
Score: 4.4
Sequence: AAACGTGATAGCCGTCAAACAA
Locus tag: CKO_01957
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
CKO_01957
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -80
Score: 3.6
Sequence: AAATGTGAGAGAGTGCAACCTG
Locus tag: CKO_02041
Name: putP
Funciton: Proline/sodium symporter PutP (TC 2.A.21.2.1)
CKO_02041
putP
Proline/sodium symporter PutP (TC 2.A.21.2.1)
Position: -200
Score: 4.1
Sequence: TGTTTTTACCTTACTCACATAA
Locus tag: CKO_00992
Name: rcsA
Funciton: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB
CKO_00992
rcsA
Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB
Position: -182
Score: 4.5
Sequence: AATTGTGAACGCTATCACGTTC
Locus tag: CKO_03100
Name: rhaB
Funciton: rhamnulokinase
Locus tag: CKO_03102
Name: rhaA
Funciton: L-rhamnose isomerase
Locus tag: CKO_03103
Name: rhaD
Funciton: rhamnulose-1-phosphate aldolase
CKO_03100
rhaB
rhamnulokinase
CKO_03102
rhaA
L-rhamnose isomerase
CKO_03103
rhaD
rhamnulose-1-phosphate aldolase
Position: -194
Score: 4.5
Sequence: GAACGTGATAGCGTTCACAATT
Position: -34
Score: 4.3
Sequence: ATTTCTGACATGTTTCTCATAT
Locus tag: CKO_03099
Name: rhaS
Funciton: L-rhamnose operon regulatory protein RhaS
CKO_03099
rhaS
L-rhamnose operon regulatory protein RhaS
Position: -148
Score: 4.1
Sequence: ATATGTGAGCCAAATCACCCGT
Locus tag: CKO_03094
Name: rhaT
Funciton: L-rhamnose-proton symport
CKO_03094
rhaT
L-rhamnose-proton symport
Position: -141
Score: 3.9
Sequence: GAATGTGAGCTAAATCACTTCA
Locus tag: CKO_02549
Name: rnk
Funciton: Regulator of nucleoside diphosphate kinase
CKO_02549
rnk
Regulator of nucleoside diphosphate kinase
Position: -176
Score: 4.1
Sequence: ATTTGGGATCGCGATCACTGAT
Locus tag: CKO_04152
Name: sdaC
Funciton: Serine transporter
CKO_04152
sdaC
Serine transporter
Position: -212
Score: 3.7
Sequence: AATTTAGAGATAAAGCACACTT
Locus tag: CKO_00612
Name: setB
Funciton: Sugar efflux transporter B
CKO_00612
setB
Sugar efflux transporter B
Position: -150
Score: 4.4
Sequence: ACGGGTGATTTGGCTCACATAT
Locus tag: CKO_03093
Name: sodA
Funciton: Manganese superoxide dismutase (EC 1.15.1.1)
CKO_03093
sodA
Manganese superoxide dismutase (EC 1.15.1.1)
Position: -93
Score: 4.3
Sequence: TTTTGAGATCAAAATAACACTT
Locus tag: CKO_04056
Name: srlA
Funciton: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Locus tag: CKO_04057
Name: srlE
Funciton: PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
Locus tag: CKO_04058
Name: srlB
Funciton: PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
Locus tag: CKO_04059
Name: srlD
Funciton: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Locus tag: CKO_04060
Name: srlM
Funciton: DNA-binding transcriptional activator of glucitol operon
Locus tag: CKO_04061
Name: srlR
Funciton: Transcriptional repressor for glucitol operon, DeoR family
Locus tag: CKO_04062
Name: srlQ
Funciton: Glucitol operon SrlQ protein
CKO_04056
srlA
PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
CKO_04057
srlE
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
CKO_04058
srlB
PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
CKO_04059
srlD
Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
CKO_04060
srlM
DNA-binding transcriptional activator of glucitol operon
CKO_04061
srlR
Transcriptional repressor for glucitol operon, DeoR family
CKO_04062
srlQ
Glucitol operon SrlQ protein
Position: -192
Score: 4.6
Sequence: ATCTGTGATCATATTCACAAAG
Position: -143
Score: 4.5
Sequence: ATATGTGATAGCGCTATCAAAA
Locus tag: CKO_00488
Name: CKO_00488
Funciton: LacI-family transcriptional regulator
CKO_00488
CKO_00488
LacI-family transcriptional regulator
Position: -225
Score: 4.3
Sequence: ATATGTTATCGCCATAAAATAT
Position: -187
Score: 3.9
Sequence: TTTTTTGACAAAAATCATGATA
Position: -82
Score: 4.6
Sequence: ATTTGTGAGTAGTCGCACATAA
Locus tag: CKO_04518
Name: tdcA
Funciton: Threonine catabolic operon transcriptional activator TdcA
Locus tag: CKO_04517
Name: tdcB
Funciton: Threonine dehydratase, catabolic (EC 4.3.1.19)
Locus tag: CKO_04516
Name: tdcC
Funciton: L-threonine/L-serine permease
Locus tag: CKO_04515
Name: tdcD
Funciton: Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
Locus tag: CKO_04514
Name: tdcE
Funciton: 2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: CKO_04513
Name: yhaR
Funciton: Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate
Locus tag: CKO_04512
Name: tdcG
Funciton: Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
CKO_04518
tdcA
Threonine catabolic operon transcriptional activator TdcA
CKO_04517
tdcB
Threonine dehydratase, catabolic (EC 4.3.1.19)
CKO_04516
tdcC
L-threonine/L-serine permease
CKO_04515
tdcD
Propionate kinase (EC 2.7.2.15) / Acetate kinase (EC 2.7.2.1)
CKO_04514
tdcE
2-ketobutyrate formate-lyase (EC 2.3.1.-) / Pyruvate formate-lyase (EC 2.3.1.54)
CKO_04513
yhaR
Hypothetical protein TdcF in cluster with anaerobic degradation of L-threonine to propionate
CKO_04512
tdcG
Predicted L-serine dehydratase (EC 4.3.1.17) TdcG
Position: -135
Score: 3.9
Sequence: AAGTGTGGCATATCTCACTTAT
Locus tag: CKO_02706
Name: tesB
Funciton: Acyl-CoA thioesterase II (EC 3.1.2.-)
CKO_02706
tesB
Acyl-CoA thioesterase II (EC 3.1.2.-)
Position: -249
Score: 4.1
Sequence: GAATGTGATCAAATTAAAAATT
Locus tag: CKO_03385
Name: thrA
Funciton: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Locus tag: CKO_03384
Name: thrB
Funciton: Homoserine kinase (EC 2.7.1.39)
Locus tag: CKO_03383
Name: thrC
Funciton: Threonine synthase (EC 4.2.3.1)
CKO_03385
thrA
Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
CKO_03384
thrB
Homoserine kinase (EC 2.7.1.39)
CKO_03383
thrC
Threonine synthase (EC 4.2.3.1)
Position: -156
Score: 3.8
Sequence: ATTTGTGATCTTCGCTGCGTTT
Locus tag: CKO_03571
Name: treB
Funciton: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Locus tag: CKO_03572
Name: treC
Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
CKO_03571
treB
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
CKO_03572
treC
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Position: -131
Score: 3.7
Sequence: ATCTGTGAAACAAGACATATTT
Locus tag: CKO_02750
Name: tsx
Funciton: Nucleoside-specific channel-forming protein Tsx precursor
CKO_02750
tsx
Nucleoside-specific channel-forming protein Tsx precursor
Position: -143
Score: 5.2
Sequence: TTATGTGATGTAAATCACTATT
Position: -91
Score: 3.9
Sequence: CATGGTGATGAGCGTCACGAAA
Locus tag: CKO_00173
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
CKO_00173
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -169
Score: 4.6
Sequence: AAAGGTGAGTGACATCACAAAT
Position: -47
Score: 4.3
Sequence: TTTATTGATCCAACTCACGAAA
Locus tag: CKO_04494
Name: uxaC
Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: CKO_04493
Name: uxaA
Funciton: Altronate hydrolase (EC 4.2.1.7)
CKO_04494
uxaC
Uronate isomerase (EC 5.3.1.12)
CKO_04493
uxaA
Altronate hydrolase (EC 4.2.1.7)
Position: -115
Score: 3.9
Sequence: GATTGTGAGCTGGATCAATCAA
Locus tag: CKO_00609
Name: uxuA
Funciton: Mannonate dehydratase (EC 4.2.1.8)
CKO_00609
uxuA
Mannonate dehydratase (EC 4.2.1.8)
Position: -214
Score: 4.1
Sequence: AATTATGACCGAGATCGTACTT
Position: -122
Score: 4.2
Sequence: TTTTGCGAGGCGGCGCACACTT
Locus tag: CKO_05021
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: CKO_05020
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
CKO_05021
xylA
Xylose isomerase (EC 5.3.1.5)
CKO_05020
xylB
Xylulose kinase (EC 2.7.1.17)
Position: -254
Score: 4.1
Sequence: AAGTGTGCGCCGCCTCGCAAAA
Position: -162
Score: 3.8
Sequence: AAGTACGATCTCGGTCATAATT
Locus tag: CKO_05022
Name: xylF
Funciton: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Locus tag: CKO_05023
Name: xylG
Funciton: D-xylose transport ATP-binding protein XylG
Locus tag: CKO_05024
Name: xylH
Funciton: Xylose ABC transporter, permease protein XylH
Locus tag: CKO_05025
Name: CKO_05025
Funciton: hypothetical protein
Locus tag: CKO_05026
Name: xylR
Funciton: Xylose activator XylR (AraC family)
CKO_05022
xylF
Xylose ABC transporter, periplasmic xylose-binding protein XylF
CKO_05023
xylG
D-xylose transport ATP-binding protein XylG
CKO_05024
xylH
Xylose ABC transporter, permease protein XylH
CKO_05025
CKO_05025
hypothetical protein
CKO_05026
xylR
Xylose activator XylR (AraC family)
Position: -57
Score: 3.7
Sequence: TTCTGTGAGGCCTCCCACAACT
Locus tag: CKO_03205
Name: cdaR
Funciton: carbohydrate diacid regulator
CKO_03205
cdaR
carbohydrate diacid regulator
Position: -78
Score: 4.2
Sequence: ATTTGTGATCTTTCTCTCACCC
Locus tag: CKO_02833
Name: yahN
Funciton: putative transport protein
CKO_02833
yahN
putative transport protein
Position: -102
Score: 4
Sequence: ATAAGTGAGATATGCCACACTT
Locus tag: CKO_02705
Name: ybaY
Funciton: Glycoprotein-polysaccharide metabolism
CKO_02705
ybaY
Glycoprotein-polysaccharide metabolism
Position: -91
Score: 4.4
Sequence: AAGTGTGATTTCCATCCCCATA
Locus tag: CKO_02527
Name: ybeD
Funciton: hypothetical protein
Locus tag: CKO_02528
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
CKO_02527
ybeD
hypothetical protein
CKO_02528
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Position: -56
Score: 4
Sequence: TTTTGTGACGACGACTACACTA
Locus tag: CKO_02337
Name: ybhP
Funciton: hypothetical protein
Locus tag: CKO_02338
Name: ybhO
Funciton: Cardiolipin synthetase (EC 2.7.8.-)
Locus tag: CKO_02339
Name: ybhN
Funciton: hypothetical protein
CKO_02337
ybhP
hypothetical protein
CKO_02338
ybhO
Cardiolipin synthetase (EC 2.7.8.-)
CKO_02339
ybhN
hypothetical protein
Position: -153
Score: 3.8
Sequence: TAGTGTAGTCGTCGTCACAAAA
Locus tag: CKO_02336
Name: ybhQ
Funciton: putative inner membrane protein
CKO_02336
ybhQ
putative inner membrane protein
Position: -124
Score: 4.5
Sequence: TTTTGTGACATACCGCATAAAT
Locus tag: CKO_02331
Name: ybiH
Funciton: putative transcriptional regulator
Locus tag: CKO_02332
Name: ybhG
Funciton: hypothetical protein
Locus tag: CKO_02333
Name: ybhF
Funciton: ABC transporter-related protein
Locus tag: CKO_02334
Name: ybhS
Funciton: ABC-2 type transporter
Locus tag: CKO_02335
Name: ybhR
Funciton: ABC-2 type transporter
CKO_02331
ybiH
putative transcriptional regulator
CKO_02332
ybhG
hypothetical protein
CKO_02333
ybhF
ABC transporter-related protein
CKO_02334
ybhS
ABC-2 type transporter
CKO_02335
ybhR
ABC-2 type transporter
Position: -202
Score: 3.8
Sequence: ATATGTGACAAACCGCTTATTA
Position: -116
Score: 4.7
Sequence: AAATGTGATTTCGTACACATCT
Locus tag: CKO_02299
Name: ybiS
Funciton: hypothetical protein
CKO_02299
ybiS
hypothetical protein
Position: -148
Score: 4.4
Sequence: AGATGTGTACGAAATCACATTT
Locus tag: CKO_02298
Name: ybiT
Funciton: ABC transporter ATP-binding protein
CKO_02298
ybiT
ABC transporter ATP-binding protein
Position: -29
Score: 4.2
Sequence: AAATTTGAACTTCCTCACGGTT
Locus tag: CKO_02171
Name: ycaD
Funciton: Hypothetical MFS-type transporter protein ycaD
CKO_02171
ycaD
Hypothetical MFS-type transporter protein ycaD
Position: -40
Score: 3.9
Sequence: AAATGTGTGCGTGATCTCATTC
Locus tag: CKO_02033
Name: ycdZ
Funciton: hypothetical protein
CKO_02033
ycdZ
hypothetical protein
Position: -227
Score: 4.4
Sequence: AGATGTGATCCAGGTCACACGT
Locus tag: CKO_01943
Name: ycfQ
Funciton: hypothetical protein
CKO_01943
ycfQ
hypothetical protein
Position: -113
Score: 3.8
Sequence: TATAATGATCGTTATAAAAAAA
Position: -86
Score: 4.5
Sequence: ACGTGTGACCTGGATCACATCT
Locus tag: CKO_01942
Name: ycfR
Funciton: hypothetical protein
CKO_01942
ycfR
hypothetical protein
Position: -167
Score: 5
Sequence: TTGCGTGATCCAGATCAAATTT
Locus tag: CKO_01319
Name: ychE
Funciton: putative channel protein
CKO_01319
ychE
putative channel protein
Position: -104
Score: 4.1
Sequence: AATTGTGATCGCCCACGCACTC
Locus tag: CKO_01260
Name: ychH
Funciton: membrane protein
CKO_01260
ychH
membrane protein
Position: -96
Score: 4
Sequence: AAACTCGATCCCGTTCGCATTA
Locus tag: CKO_01463
Name: ydcH
Funciton: hypothetical protein
CKO_01463
ydcH
hypothetical protein
Position: -71
Score: 3.6
Sequence: TTTTGCTATCAGGTTATCAAAA
Locus tag: CKO_01457
Name: ydcI
Funciton: putative transcriptional regulators, LysR family
CKO_01457
ydcI
putative transcriptional regulators, LysR family
Position: -96
Score: 4.1
Sequence: ATTTGTGCTGGCGATACCATTT
Locus tag: CKO_01468
Name: ydcL
Funciton: hypothetical protein
CKO_01468
ydcL
hypothetical protein
Position: -94
Score: 4.8
Sequence: TAATGAGACATACATCACAAAA
Locus tag: CKO_01548
Name: sotB
Funciton: Probable sugar efflux transporter
CKO_01548
sotB
Probable sugar efflux transporter
Position: -95
Score: 4
Sequence: TTATCTGATTTTACTCCCACTT
Locus tag: CKO_01604
Name: ydgD
Funciton: hypothetical protein
CKO_01604
ydgD
hypothetical protein
Position: -71
Score: 4.4
Sequence: TTTTGTGATTGATGTCATGCTT
Locus tag: CKO_01669
Name: ydhP
Funciton: hypothetical protein
CKO_01669
ydhP
hypothetical protein
Position: -90
Score: 3.7
Sequence: ATATAAGAGGTCGGTCACAGTT
Locus tag: CKO_01755
Name: tcyP
Funciton: L-cystine uptake protein TcyP
CKO_01755
tcyP
L-cystine uptake protein TcyP
Position: -107
Score: 4.9
Sequence: AAACGTGATTCCGATCACGATT
Locus tag: CKO_01799
Name: msrB
Funciton: methionine sulfoxide reductase B
Locus tag: CKO_01798
Name: b1777
Funciton: conserved hypothetical protein
CKO_01799
msrB
methionine sulfoxide reductase B
CKO_01798
b1777
conserved hypothetical protein
Position: -97
Score: 4.9
Sequence: AAAAGTGACATTTATCACAAAT
Locus tag: CKO_01818
Name: yeaQ
Funciton: Transglycosylase associated protein
CKO_01818
yeaQ
Transglycosylase associated protein
Position: -42
Score: 4.5
Sequence: AATTGTGACAACTGTCATATAA
Locus tag: CKO_00719
Name: yegH
Funciton: putative membrane protein
CKO_00719
yegH
putative membrane protein
Position: -134
Score: 4.4
Sequence: AATATCGATCTGCATCACATAA
Locus tag: CKO_00411
Name: yfeO
Funciton: Chloride channel protein
CKO_00411
yfeO
Chloride channel protein
Position: -37
Score: 3.6
Sequence: AAAATTGATTTATTGCATCTAT
Locus tag: CKO_00385
Name: yfeR
Funciton: transcriptional regulator, LysR family
CKO_00385
yfeR
transcriptional regulator, LysR family
Position: -276
Score: 4
Sequence: TTATGTGACTTACTGCAATATT
Locus tag: CKO_00317
Name: yffB
Funciton: FIG138056: a glutathione-dependent thiol reductase
Locus tag: CKO_00316
Name: dapE
Funciton: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
CKO_00317
yffB
FIG138056: a glutathione-dependent thiol reductase
CKO_00316
dapE
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
Position: -40
Score: 5.2
Sequence: TAATGTGATTTAAATCACGCTT
Locus tag: CKO_03918
Name: raiA
Funciton: stationary phase translation inhibitor and ribosome stability factor
CKO_03918
raiA
stationary phase translation inhibitor and ribosome stability factor
Position: -127
Score: 4
Sequence: TTTGTTGATTTAAATCAAAGAA
Locus tag: CKO_00205
Name: grcA
Funciton: Autonomous glycyl radical cofactor
CKO_00205
grcA
Autonomous glycyl radical cofactor
Position: -180
Score: 4.7
Sequence: TGTTGTGATCTGCTTCAAGAAT
Locus tag: CKO_04511
Name: yhaO
Funciton: hypothetical protein
Locus tag: CKO_04510
Name: yhaM
Funciton: hypothetical protein
CKO_04511
yhaO
hypothetical protein
CKO_04510
yhaM
hypothetical protein
Position: -92
Score: 3.7
Sequence: TTTTGTTACATGAATCAGTTAA
Position: -70
Score: 3.6
Sequence: ATGTGTGAAGCGCAGCATTTTA
Locus tag: CKO_04612
Name: elbB
Funciton: sigma cross-reacting protein 27A (SCRP-27A)
Locus tag: CKO_04611
Name: mtgA
Funciton: monofunctional biosynthetic peptidoglycan transglycosylase
CKO_04612
elbB
sigma cross-reacting protein 27A (SCRP-27A)
CKO_04611
mtgA
monofunctional biosynthetic peptidoglycan transglycosylase
Position: -60
Score: 5
Sequence: TTTTGTGATGAGGGTCACGAAA
Locus tag: CKO_04644
Name: yhcN
Funciton: hypothetical protein
CKO_04644
yhcN
hypothetical protein
Position: -168
Score: 5.4
Sequence: AAAAGTGATTTAGATCACATAT
Locus tag: CKO_04650
Name: yhcR
Funciton: hypothetical protein
CKO_04650
yhcR
hypothetical protein
Position: -155
Score: 4
Sequence: TTGTGTGAAGCATTTCATAGAC
Position: -94
Score: 3.7
Sequence: TTATTTGAGCGAAATCCCGCTT
Locus tag: CKO_04963
Name: yhjE
Funciton: Inner membrane metabolite transport protein YhjE
CKO_04963
yhjE
Inner membrane metabolite transport protein YhjE
Position: -177
Score: 4.1
Sequence: AAGTGTGTTTCAGTTCACGATC
Locus tag: CKO_05033
Name: yiaK
Funciton: 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
Locus tag: CKO_05034
Name: yiaL
Funciton: Protein YiaL
Locus tag: CKO_05035
Name: CKO_05035
Funciton: Putative chemotaxis protein, resembles cheA
Locus tag: CKO_05036
Name: yiaO
Funciton: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
Locus tag: CKO_05037
Name: lyxK
Funciton: L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
Locus tag: CKO_05039
Name: sgbH
Funciton: 3-keto-L-gulonate 6-phosphate decarboxylase
Locus tag: CKO_05040
Name: sgbU
Funciton: putative 3-hexulose-6-phosphate isomerase
Locus tag: CKO_05041
Name: sgbE
Funciton: L-ribulose-5-phosphate 4-epimerase
CKO_05033
yiaK
3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
CKO_05034
yiaL
Protein YiaL
CKO_05035
CKO_05035
Putative chemotaxis protein, resembles cheA
CKO_05036
yiaO
2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
CKO_05037
lyxK
L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
CKO_05039
sgbH
3-keto-L-gulonate 6-phosphate decarboxylase
CKO_05040
sgbU
putative 3-hexulose-6-phosphate isomerase
CKO_05041
sgbE
L-ribulose-5-phosphate 4-epimerase
Position: -58
Score: 4.7
Sequence: AATCGTGATATTACGCACAAAT
Locus tag: CKO_05103
Name: yicG
Funciton: Putative inner membrane protein
CKO_05103
yicG
Putative inner membrane protein
Position: -56
Score: 4.1
Sequence: TTTTTTGAGCGGAATCGCGTTA
Locus tag: CKO_00044
Name: yidA
Funciton: Phosphatase YidA
CKO_00044
yidA
Phosphatase YidA
Position: -70
Score: 3.6
Sequence: AAAATTGACAGCCGTCACTTTT
Locus tag: CKO_03130
Name: yihV
Funciton: Fructokinase (EC 2.7.1.4); Sugar kinase YihV
Locus tag: CKO_03129
Name: yihW
Funciton: DeoR-type transcriptional regulator YihW
CKO_03130
yihV
Fructokinase (EC 2.7.1.4); Sugar kinase YihV
CKO_03129
yihW
DeoR-type transcriptional regulator YihW
Position: -150
Score: 5.7
Sequence: TATTGTGATATAGTTCACAAAA
Locus tag: CKO_03830
Name: yjcB
Funciton: hypothetical protein
CKO_03830
yjcB
hypothetical protein
Position: -136
Score: 3.9
Sequence: AATTGTTATCTCTCACGCGATT
Position: -94
Score: 3.6
Sequence: AAGCGTAATCCACTTCTCAACA
Locus tag: CKO_03647
Name: yjfP
Funciton: putative hydrolase
CKO_03647
yjfP
putative hydrolase
Position: -228
Score: 5.2
Sequence: ATTAGTGATCTCAATCACATAA
Locus tag: CKO_03443
Name: cstA2
Funciton: Carbon starvation protein A paralog
Locus tag: CKO_03444
Name: yjiX
Funciton: hypothetical protein
Locus tag: CKO_03445
Name: yjiA
Funciton: ATP-binding protein
CKO_03443
cstA2
Carbon starvation protein A paralog
CKO_03444
yjiX
hypothetical protein
CKO_03445
yjiA
ATP-binding protein
Position: -75
Score: 3.7
Sequence: CACTTCGATATACATCACAGTT
Position: -22
Score: 4.4
Sequence: TAACGAGATCCACTTCAAATAA
Locus tag: CKO_03411
Name: yjjI
Funciton: hypothetical protein
Locus tag: CKO_03412
Name: yjjW
Funciton: predicted pyruvate formate lyase activating enzyme
CKO_03411
yjjI
hypothetical protein
CKO_03412
yjjW
predicted pyruvate formate lyase activating enzyme
Position: -222
Score: 3.7
Sequence: AGGTGTGATTCATTCTAAATTA
Position: -53
Score: 4.2
Sequence: TATGTTGACATTGGTCACATTA
Locus tag: CKO_03386
Name: yjtD
Funciton: RNA methyltransferase, TrmH family, group 1
CKO_03386
yjtD
RNA methyltransferase, TrmH family, group 1
Position: -107
Score: 3.6
Sequence: AAaTGTGcagTAaATCACAcgg
Locus tag: CKO_01593
Name: mlc
Funciton: ROK family transcriptional regulatory protein
CKO_01593
mlc
ROK family transcriptional regulatory protein
Position: -81
Score: 4
Sequence: TTATGCGCTGTACATAAAATAA
Locus tag: CKO_00659
Name: yohC
Funciton: hypothetical protein
CKO_00659
yohC
hypothetical protein
Position: -68
Score: 4.6
Sequence: TGATGTGATCGGTAGCACGTTT
Locus tag: CKO_00648
Name: yohJ
Funciton: LrgA family protein
Locus tag: CKO_00647
Name: yohK
Funciton: LrgB family protein
CKO_00648
yohJ
LrgA family protein
CKO_00647
yohK
LrgB family protein
Position: -92
Score: 4.6
Sequence: CTTTGTGATAAAACTCACCATT
Locus tag: CKO_04222
Name: yqeF
Funciton: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
CKO_04222
yqeF
Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -221
Score: 3.9
Sequence: TCTTGTGAAGCGTTTCACTTTG
Position: -81
Score: 3.8
Sequence: ATTTTTGATACCTGAAACACTT
Locus tag: CKO_04691
Name: yrdA
Funciton: carbonic anhydrase, family 3
CKO_04691
yrdA
carbonic anhydrase, family 3
Position: -290
Score: 3.9
Sequence: TTGTGCGATATACAGCACGGTT
Position: -238
Score: 3.7
Sequence: TTATGTAACGTAGTAAAAATTA
Locus tag: CKO_04821
Name: igaA
Funciton: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
CKO_04821
igaA
IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Position: -130
Score: 3.7
Sequence: AGTTGTGATTAACCTTTTATTT
Locus tag: CKO_03603
Name: ytfQ
Funciton: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Locus tag: CKO_03602
Name: ytfR
Funciton: Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
Locus tag: CKO_03601
Name: ytfT
Funciton: Putative sugar ABC transport system, permease protein YtfT
Locus tag: CKO_03600
Name: yjfF
Funciton: Putative sugar ABC transport system, permease protein YjfF
CKO_03603
ytfQ
Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
CKO_03602
ytfR
Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
CKO_03601
ytfT
Putative sugar ABC transport system, permease protein YtfT
CKO_03600
yjfF
Putative sugar ABC transport system, permease protein YjfF
Position: -165
Score: 4.2
Sequence: ACATGTGAGCGGGATCAAATTC
Locus tag: CKO_00279
Name: guaB
Funciton: inosine-5'-monophosphate dehydrogenase
Locus tag: CKO_00280
Name: guaA
Funciton: bifunctional GMP synthase/glutamine amidotransferase protein
CKO_00279
guaB
inosine-5'-monophosphate dehydrogenase
CKO_00280
guaA
bifunctional GMP synthase/glutamine amidotransferase protein
Position: -270
Score: 3.3
Sequence: TAATCTTATTATCATCAAACAC
Locus tag: CKO_04101
Name: rpoS
Funciton: RNA polymerase sigma factor RpoS
CKO_04101
rpoS
RNA polymerase sigma factor RpoS
Position: -180
Score: 3.2
Sequence: ATTTGTGCATAGTTACATCTTT
Position: -157
Score: 3.1
Sequence: AAACGTTATTTCTGTAATCTTG
Position: -148
Score: 3.3
Sequence: TTCTGTAATCTTGTTAAAATGT
Position: -120
Score: 3.2
Sequence: TTTACTGATTTCAATCAAAACC
Locus tag: CKO_03260
Name: pdhR
Funciton: Transcriptional repressor for pyruvate dehydrogenase complex
Locus tag: CKO_03259
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: CKO_03258
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
CKO_03260
pdhR
Transcriptional repressor for pyruvate dehydrogenase complex
CKO_03259
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
CKO_03258
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Position: -118
Score: 3.4
Sequence: AAGTGTGATGTCAGGCAACTGA
Locus tag: CKO_04437
Name: glgS
Funciton: glycogen synthesis protein GlgS
CKO_04437
glgS
glycogen synthesis protein GlgS
Position: -110
Score: 4
Sequence: ATTTGTGAATAAAAATACATTA
Locus tag: CKO_03036
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: CKO_03035
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: CKO_03034
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
CKO_03036
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
CKO_03035
argB
Acetylglutamate kinase (EC 2.7.2.8)
CKO_03034
argH
Argininosuccinate lyase (EC 4.3.2.1)
Position: -242
Score: 4.9
Sequence: AAATTTGATCTGGATCACGCAA
Locus tag: CKO_01318
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
CKO_01318
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -144
Score: 3.8
Sequence: AAGCACGATTTCGCTCACACTA
Locus tag: CKO_03349
Name: caiF
Funciton: transcriptional activator for carnitine metabolism
CKO_03349
caiF
transcriptional activator for carnitine metabolism
Position: -214
Score: 4
Sequence: AATAGTGACCTCGCGCAAATAG
Locus tag: CKO_02720
Name: hupB
Funciton: HU, DNA-binding transcriptional regulator, beta subunit
CKO_02720
hupB
HU, DNA-binding transcriptional regulator, beta subunit
Position: -107
Score: 3.4
Sequence: TTTCTTGCTTACCGTCACACTG
Locus tag: CKO_01789
Name: gdhA
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
CKO_01789
gdhA
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -103
Score: 4
Sequence: TAGTGCGGCGCAAATCACATTA
Position: -56
Score: 3.9
Sequence: ATAAGTGATTGATAAAACGTTT
Position: -42
Score: 3.6
Sequence: AAACGTTTTATCTGTCACGTTA
Locus tag: CKO_01626
Name: malI
Funciton: Maltose regulon regulatory protein MalI (repressor for malXY)
CKO_01626
malI
Maltose regulon regulatory protein MalI (repressor for malXY)
Position: -157
Score: 3.5
Sequence: GATAACGATCTGGATCACATTC
Position: -106
Score: 3.4
Sequence: CCCTGTGACCTTACTCACGTAG
Locus tag: CKO_00640
Name: galS
Funciton: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
CKO_00640
galS
Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Position: -219
Score: 3.5
Sequence: GAGTGCGAGTCTGCTCACATAC
Locus tag: CKO_00775
Name: sbmC
Funciton: DNA gyrase inhibitor
CKO_00775
sbmC
DNA gyrase inhibitor
Position: -105
Score: 3.4
Sequence: TTCTGTGATGCTCGCCAGCATT
Position: -42
Score: 3.6
Sequence: TTTAGCTATCCTTATCAAACAA
Locus tag: CKO_00245
Name: csiE
Funciton: Stationary phase inducible protein CsiE
CKO_00245
csiE
Stationary phase inducible protein CsiE
Position: -146
Score: 3.4
Sequence: TTTTTCGAGCGGCCTCGCAAAC
Locus tag: CKO_03268
Name: ppdD
Funciton: predicted major pilin subunit
Locus tag: CKO_03269
Name: pulE
Funciton: conserved protein with nucleoside triphosphate hydrolase domain
CKO_03268
ppdD
predicted major pilin subunit
CKO_03269
pulE
conserved protein with nucleoside triphosphate hydrolase domain
Position: -179
Score: 3.4
Sequence: AATTTTGTTTTTTCTTATAATT
Locus tag: CKO_02831
Name: prpR
Funciton: Propionate catabolism operon regulatory protein PrpR
CKO_02831
prpR
Propionate catabolism operon regulatory protein PrpR
Position: -199
Score: 3.5
Sequence: CAACGAGAGTTGATTCAAAAAA
Locus tag: CKO_04317
Name: metK
Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
CKO_04317
metK
S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -108
Score: 3.7
Sequence: AAATGTGACAAACATTCCGATT
Locus tag: CKO_01456
Name: trg
Funciton: Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
CKO_01456
trg
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
Position: -95
Score: 3.3
Sequence: AATTGTTAACAATTTTGTAAAA
Locus tag: CKO_03256
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
CKO_03256
lpdA
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -249
Score: 3.8
Sequence: AACAATGACCGACATCGCATAA
Locus tag: CKO_00542
Name: ubiG
Funciton: 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)
CKO_00542
ubiG
3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)
Position: -171
Score: 4.6
Sequence: TTGTGTGACGTAGCGCGCATTT
Locus tag: CKO_02165
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Locus tag: CKO_02164
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
CKO_02165
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
CKO_02164
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -207
Score: 4.1
Sequence: TTTTGTTACAAGTTTAACACTT
Locus tag: CKO_02029
Name: csgD
Funciton: DNA-binding transcriptional activator in two-component regulatory system
Locus tag: CKO_02030
Name: csgE
Funciton: hypothetical protein
Locus tag: CKO_02031
Name: csgF
Funciton: hypothetical protein
CKO_02029
csgD
DNA-binding transcriptional activator in two-component regulatory system
CKO_02030
csgE
hypothetical protein
CKO_02031
csgF
hypothetical protein
Position: -174
Score: 4
Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: CKO_00148
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
CKO_00148
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -298
Score: 4.7
Sequence: TTTTGTGATTTTTATCGCGGAT
Locus tag: CKO_02849
Name: tnaA
Funciton: Tryptophanase (EC 4.1.99.1)
Locus tag: CKO_02850
Name: tnaB
Funciton: Low affinity tryptophan permease
CKO_02849
tnaA
Tryptophanase (EC 4.1.99.1)
CKO_02850
tnaB
Low affinity tryptophan permease
Position: -152
Score: 4.7
Sequence: TTACGTGACGGACTTCACCTTT
Locus tag: CKO_00005
Name: uhpT
Funciton: Hexose phosphate transport protein UhpT
CKO_00005
uhpT
Hexose phosphate transport protein UhpT
Position: -94
Score: 3.6
Sequence: TATCGTGACCGCAGTCGTAAAG
Locus tag: CKO_05043
Name: aldB
Funciton: Aldehyde dehydrogenase B (EC 1.2.1.22)
CKO_05043
aldB
Aldehyde dehydrogenase B (EC 1.2.1.22)
Position: -187
Score: 3.3
Sequence: GAATGTGATGTCCTCTGCATAC
Locus tag: CKO_04775
Name: yhfA
Funciton: hypothetical protein
CKO_04775
yhfA
hypothetical protein
Position: -63
Score: 3.8
Sequence: GATCGTGAACTGAAACACACTT
Locus tag: CKO_05032
Name: yiaJ
Funciton: Hypothetical transcriptional regulator yiaJ, IclR family
CKO_05032
yiaJ
Hypothetical transcriptional regulator yiaJ, IclR family
Position: -185
Score: 3.3
Sequence: TATTTTTCTGTCATTCGCGCAT
Position: -162
Score: 3.2
Sequence: TCATGTTACCTCGCGAGCATAA
Locus tag: CKO_04874
Name: ugpB
Funciton: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Locus tag: CKO_04873
Name: ugpA
Funciton: SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
Locus tag: CKO_04872
Name: ugpE
Funciton: SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)
Locus tag: CKO_04871
Name: ugpC
Funciton: SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)
Locus tag: CKO_04870
Name: ugpQ
Funciton: Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
CKO_04874
ugpB
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
CKO_04873
ugpA
SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
CKO_04872
ugpE
SN-glycerol-3-phosphate transport system permease protein UgpE (TC 3.A.1.1.3)
CKO_04871
ugpC
SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)
CKO_04870
ugpQ
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
Position: -236
Score: 4.2
Sequence: TAACATGACCTGCCTCTCATAA
Position: -178
Score: 3.8
Sequence: ATATGTTACCCGTATCATTCAT
Locus tag: CKO_04836
Name: gntT
Funciton: gluconate transporter
CKO_04836
gntT
gluconate transporter
Position: -76
Score: 3.4
Sequence: GAATTTGATTTACATCAATAAG
Locus tag: CKO_04789
Name: nirB
Funciton: nitrite reductase (NAD(P)H) subunit
Locus tag: CKO_04790
Name: nirD
Funciton: nitrite reductase small subunit
CKO_04789
nirB
nitrite reductase (NAD(P)H) subunit
CKO_04790
nirD
nitrite reductase small subunit
Position: -124
Score: 3.9
Sequence: ATTTGCGTGGTGCGTCACAATT
Position: -87
Score: 3.8
Sequence: TGTTGTGATTACTTTTGAAAAT
Locus tag: CKO_03643
Name: ulaA
Funciton: Ascorbate-specific PTS system, EIIC component
Locus tag: CKO_03642
Name: ulaB
Funciton: Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
Locus tag: CKO_03641
Name: ulaC
Funciton: Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
CKO_03643
ulaA
Ascorbate-specific PTS system, EIIC component
CKO_03642
ulaB
Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69)
CKO_03641
ulaC
Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-)
Position: -115
Score: 3.7
Sequence: TTCTGTGACATAAATTACGCAG
Locus tag: CKO_03376
Name: proP
Funciton: L-Proline/Glycine betaine transporter ProP
CKO_03376
proP
L-Proline/Glycine betaine transporter ProP
Position: -166
Score: 3.3
Sequence: TATTTTTATTGTTATCAATAAG
Locus tag: CKO_03906
Name: aceB
Funciton: malate synthase A
Locus tag: CKO_03905
Name: aceA
Funciton: isocitrate lyase
CKO_03906
aceB
malate synthase A
CKO_03905
aceA
isocitrate lyase
Position: -179
Score: 3.4
Sequence: AAACGTGATTTAACGCCTGATT
Locus tag: CKO_02986
Name: hupA
Funciton: DNA-binding protein HU-alpha (HU-2)
CKO_02986
hupA
DNA-binding protein HU-alpha (HU-2)
Position: -52
Score: 3.9
Sequence: GACTGTGATCTATTTATCAAAA
Locus tag: CKO_03748
Name: dcuB
Funciton: C4-dicarboxylate transporter DcuB
CKO_03748
dcuB
C4-dicarboxylate transporter DcuB
Position: -203
Score: 5.2
Sequence: TTTTGTGATCAATATCACATCA
Position: -159
Score: 5
Sequence: TCATGTGATCCAAATCACACAA
Position: -110
Score: 3.4
Sequence: TTCAGTGCCAGATTTCGCACTA
Locus tag: CKO_05054
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: CKO_05055
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: CKO_05056
Name: mtlR
Funciton: Mannitol operon repressor
CKO_05054
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
CKO_05055
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
CKO_05056
mtlR
Mannitol operon repressor
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