Regulon of SdaR in Citrobacter koseri ATCC BAA-895
| Regulator type: | Transcription factor |
| TF locus tag: | CKO_03205 |
| Regulator family: | SdaR |
| Regulation mode: | activator |
| Biological process: | Glucarate utilization; Galactarate utilization |
| Effector: | Glycerate |
| Regulog: | SdaR - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - SdaR
- By TF family - SdaR
- By effector - Glycerate
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -203
Score: 5.6 Sequence: CGTTGTGCAAATGCTCAAAA
Locus tag: CKO_04523
Name: garL Funciton: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
Locus tag: CKO_04522
Name: garR Funciton: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
Locus tag: CKO_04521
Name: garK Funciton: Glycerate kinase (EC 2.7.1.31) |
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garL
|
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20)
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garR
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2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)
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garK
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Glycerate kinase (EC 2.7.1.31)
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Position: -388
Score: 4.9 Sequence: CATCAGGCATTTGCCCTAAA
Locus tag: CKO_04143
Name: gudP Funciton: D-glucarate permease, MFS family
Locus tag: CKO_04142
Name: gudX Funciton: Glucarate dehydratase related protein (EC 4.2.1.-)
Locus tag: CKO_04141
Name: gudD Funciton: Glucarate dehydratase (EC 4.2.1.40)
Locus tag: CKO_04140
Name: garK Funciton: Glycerate kinase (EC 2.7.1.31) |
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gudP
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D-glucarate permease, MFS family
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gudX
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Glucarate dehydratase related protein (EC 4.2.1.-)
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gudD
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Glucarate dehydratase (EC 4.2.1.40)
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garK
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Glycerate kinase (EC 2.7.1.31)
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Position: -17
Score: 5.1 Sequence: GTTTGTGCAGATGCACAATG
Locus tag: CKO_03205
Name: sdaR Funciton: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
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sdaR
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Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family
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Position: -223
Score: 5.6 Sequence: TTTTGAGCATTTGCACAACG
Locus tag: CKO_04527
Name: garD Funciton: D-galactarate dehydratase (EC 4.2.1.42) |
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garD
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D-galactarate dehydratase (EC 4.2.1.42)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |