Regulog SdaR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | SdaR |
| Regulation mode: | activator |
| Biological process: | Glucarate utilization; Galactarate utilization |
| Effector: | Glycerate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - SdaR
- By TF family - SdaR
- By effector - Glycerate
- By pathway - Glucarate utilization
- By pathway - Galactarate utilization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 9 | 4 |
| Salmonella typhimurium LT2 | 9 | 4 |
| Citrobacter koseri ATCC BAA-895 | 9 | 4 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 10 | 4 |
| Enterobacter sp. 638 | 10 | 4 |
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | ||
| Serratia proteamaculans 568 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | 8 | 4 |
| Edwardsiella tarda EIB202 | ||
| Proteus mirabilis HI4320 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| garD |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -250 score = 4.50599 sequence = CATTGTGCAAATGCTAATTT Site: position = -208 score = 5.98822 sequence = TTTTGAGCATATGCACATAA Gene: b3128: D-galactarate dehydratase (EC 4.2.1.42) |
*
Salmonella typhimurium LT2 Site: position = -276 score = 4.77058 sequence = CATTGTGCAAACGCTCATTA Site: position = -233 score = 5.12915 sequence = TTTTGAGCATACGCCCATGA Gene: STM3250: D-galactarate dehydratase (EC 4.2.1.42) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -223 score = 5.5751 sequence = TTTTGAGCATTTGCACAACG Gene: CKO_04527: D-galactarate dehydratase (EC 4.2.1.42) |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -206 score = 4.69404 sequence = AATTGTGCTTATGCCATAAG Gene: KPN_03540: D-galactarate dehydratase (EC 4.2.1.42) |
*
Enterobacter sp. 638 Site: position = -224 score = 5.37345 sequence = ATTTGAGCATATGCACAACC Gene: Ent638_3570: D-galactarate dehydratase (EC 4.2.1.42) |
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -140 score = 4.15729 sequence = CTTAGGTCAATTGCATAATG Site: position = -316 score = 4.55689 sequence = GTTGGTGCACTTGCCCTATA Gene: ECA3578: D-galactarate dehydratase (EC 4.2.1.42) |
|
|
|
D-galactarate dehydratase (EC 4.2.1.42) |
| CRON 2. | |||||||||||||
| gudX |
Gene: b2788: Glucarate dehydratase related protein (EC 4.2.1.-) |
Gene: STM2961: Glucarate dehydratase related protein (EC 4.2.1.-) |
Gene: CKO_04142: Glucarate dehydratase related protein (EC 4.2.1.-) |
Gene: KPN_03131: Glucarate dehydratase related protein (EC 4.2.1.-) |
Gene: Ent638_3241: Glucarate dehydratase related protein (EC 4.2.1.-) |
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -358 score = 4.10233 sequence = TGCTGGGCTATTGCCCAATG Gene: ECA3576: Glucarate dehydratase related protein (EC 4.2.1.-) |
|
|
|
Glucarate dehydratase related protein (EC 4.2.1.-) |
| gudD |
Gene: b2787: Glucarate dehydratase (EC 4.2.1.40) |
Gene: STM2960: Glucarate dehydratase (EC 4.2.1.40) |
Gene: CKO_04141: Glucarate dehydratase (EC 4.2.1.40) |
Gene: KPN_03130: Glucarate dehydratase (EC 4.2.1.40) |
Gene: Ent638_3240: Glucarate dehydratase (EC 4.2.1.40) |
|
|
|
Gene: ECA3575: Glucarate dehydratase (EC 4.2.1.40) |
|
|
|
Glucarate dehydratase (EC 4.2.1.40) |
| garL |
Gene: b3126: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
*
Salmonella typhimurium LT2 Site: position = -316 score = 5.12915 sequence = TCATGGGCGTATGCTCAAAA Site: position = -273 score = 4.77058 sequence = TAATGAGCGTTTGCACAATG Gene: STM3249: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
*
Citrobacter koseri ATCC BAA-895 Site: position = -203 score = 5.5751 sequence = CGTTGTGCAAATGCTCAAAA Gene: CKO_04523: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
Gene: KPN_03538: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
Gene: Ent638_3568: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
|
|
|
Gene: ECA3574: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
|
|
|
2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) |
| garR |
Gene: b3125: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: STM3248: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: CKO_04522: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: KPN_03537: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
Gene: Ent638_3567: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
|
|
|
Gene: ECA3573: 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
|
|
|
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) |
| garK |
Gene: b3124: Glycerate kinase (EC 2.7.1.31) |
2
Salmonella typhimurium LT2 Gene: STM3247: Glycerate kinase (EC 2.7.1.31) Gene: STM2959: Glycerate kinase (EC 2.7.1.31) |
2
Citrobacter koseri ATCC BAA-895 Gene: CKO_04140: Glycerate kinase (EC 2.7.1.31) Gene: CKO_04521: Glycerate kinase (EC 2.7.1.31) |
2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_03129: Glycerate kinase (EC 2.7.1.31) Gene: KPN_03536: Glycerate kinase (EC 2.7.1.31) |
2
Enterobacter sp. 638 Gene: Ent638_3239: Glycerate kinase (EC 2.7.1.31) Gene: Ent638_3566: Glycerate kinase (EC 2.7.1.31) |
|
|
|
Gene: ECA3572: Glycerate kinase (EC 2.7.1.31) |
|
|
|
Glycerate kinase (EC 2.7.1.31) |
| garP |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -144 score = 4.50599 sequence = AAATTAGCATTTGCACAATG Site: position = -186 score = 5.98822 sequence = TTATGTGCATATGCTCAAAA Gene: b3127: D-galactarate permease, MFS family |
|
|
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -206 score = 4.69404 sequence = CTTATGGCATAAGCACAATT Gene: KPN_03539: D-galactarate permease, MFS family |
*
Enterobacter sp. 638 Site: position = -208 score = 5.37345 sequence = GGTTGTGCATATGCTCAAAT Gene: Ent638_3569: D-galactarate permease, MFS family |
|
|
|
|
|
|
|
D-galactarate permease, MFS family |
| gudP |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -385 score = 4.7362 sequence = TTTCAGGCAAATGCCAGTAA Gene: b2789: D-glucarate permease, MFS family |
*
Salmonella typhimurium LT2 Site: position = -376 score = 5.52925 sequence = CTTTGTGCATATGCCCGCAA Gene: STM2962: D-glucarate permease, MFS family |
*
Citrobacter koseri ATCC BAA-895 Site: position = -388 score = 4.94857 sequence = CATCAGGCATTTGCCCTAAA Gene: CKO_04143: D-glucarate permease, MFS family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -376 score = 4.38968 sequence = CTTTAGGCAAACGCCACAAT Site: position = -221 score = 4.5698 sequence = TTTCAGGCATTCGCCACAAA Gene: KPN_03132: D-glucarate permease, MFS family |
*
Enterobacter sp. 638 Site: position = -240 score = 4.89438 sequence = CGTTGTGCTTATGCCTCAAA Gene: Ent638_3242: D-glucarate permease, MFS family |
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -440 score = 4.15729 sequence = CATTATGCAATTGACCTAAG Site: position = -264 score = 4.55689 sequence = TATAGGGCAAGTGCACCAAC Gene: ECA3577: D-glucarate permease, MFS family |
|
|
|
D-glucarate permease, MFS family |
| CRON 3. | |||||||||||||
| sdaR |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -69 score = 5.3349 sequence = CTTTAGGCATTTGCACAATG Gene: b0162: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
*
Salmonella typhimurium LT2 Site: position = -71 score = 5.7879 sequence = TTTTGTGCATTTGCACAATG Gene: STM0210: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
*
Citrobacter koseri ATCC BAA-895 Site: position = -17 score = 5.10846 sequence = GTTTGTGCAGATGCACAATG Gene: CKO_03205: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -17 score = 5.40889 sequence = CTTAGTGCAAATGCACAATG Gene: KPN_00177: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
*
Enterobacter sp. 638 Site: position = -71 score = 5.30531 sequence = CTTTGTGCATTCGCACAATG Gene: Ent638_0702: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
|
|
|
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -80 score = 4.29729 sequence = CTTTGTTAATTTGCACAATG Gene: ECA3300: Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
|
|
|
Glycerate-responsive transcriptional regulator for hexarate utilization, SdaR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |