Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Shewanella sediminis HAW-EB3

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 25 27
TF AzrR Paraquat Superoxide stress response 2 2
TF BetI Betaine Osmotic stress response 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 216 169
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Nucleoside utilization 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 5
TF Fnr Oxygen Anaerobic metabolism 47 48
TF Fur Iron ion, (Fe2+) Iron homeostasis 24 26
TF GcvA Glycine Glycine metabolism 8 6
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 20 23
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 4
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 10 11
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 5 6
TF LexA DNA damage SOS response 10 11
TF LiuR Branched-chain amino acid degradation 9 8
TF LldR L-lactate Lactate utilization 1 1
TF MetJ S-adenosylmethionine Methionine biosynthesis; Methionine metabolism 13 32
TF MetR Homocysteine Methionine biosynthesis 7 8
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 7 7
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 32 16
TF NhaR Potassium ion Osmotic stress response 2 2
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 3 2
TF NorR Nitric oxide Nitrosative stress response 3 9
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 5 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 5
TF PUR Purine metabolism 5 4
TF PdhR Pyruvate Pyruvate metabolism 11 8
TF PflR Formate Formate metabolism 4 4
TF PhsR Thiosulfate Thiosulfate reduction 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 2 5
TF PsrA Oleate Fatty acid degradation 18 19
TF SO1415 3 3
TF SO1703 Multidrug resistance 2 1
TF SO1758 1 1
TF SO3277 Multidrug resistance 2 4
TF SO3393 Drug resistance 2 6
TF SO3627 2 2
TF SO4326 Multidrug resistance 1 1
TF SO4468 2 2
TF SO4705 2 2
TF SdaR Glycerate Glycerate utilization 1 1
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TsrR Thiosulfate Thiosulfate reduction 3 4
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 21 19
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 6 5
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA Purine Adenine; Guanine Purine metabolism 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 1 1
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