Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_0200
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Shewanellaceae
Statistics of regulated genes:
- Genes 14
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -39
Score: 6.1
Sequence: TACTGTATATTTATACAGTA
Locus tag: Ssed_2172
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Ssed_2171
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
umuD
DNA polymerase V, subunit UmuD
umuC
DNA polymerase V, subunit UmuC

Position: -135
Score: 5.6
Sequence: TACTGTATGATTGTACAGTA
Locus tag: Ssed_1300
Name: recA
Funciton: Recombinase A
recA
Recombinase A

Position: -45
Score: 5.6
Sequence: TACTGTATATACTAACAGTT
Position: -26
Score: 5
Sequence: TACTGTATAGAAAGACAGGA
Locus tag: Ssed_0200
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Ssed_0199
Name: sulA
Funciton: Cell division inhibitor sulA
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
sulA
Cell division inhibitor sulA

Position: -38
Score: 5.4
Sequence: TACTGGTAATTTATACAGTG
Locus tag: Ssed_1658
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB
DNA topoisomerase III (EC 5.99.1.2)

Position: -62
Score: 5.8
Sequence: TACTGTATATAAAATCAGTA
Position: -40
Score: 5.5
Sequence: TACTGTTTAAAAACACAGTA
Locus tag: Ssed_1281
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -36
Score: 5.1
Sequence: CACTGTTATTATGTACAGCT
Locus tag: Ssed_1566
Name: dinG
Funciton: ATP-dependent helicase DinG/Rad3
Locus tag: Ssed_1565
Name: SO1818
Funciton: protein of unknown function DUF81
Locus tag: Ssed_1564
Name: SO1817
Funciton: Primosomal replication protein N prime-like protein
dinG
ATP-dependent helicase DinG/Rad3
SO1818
protein of unknown function DUF81
SO1817
Primosomal replication protein N prime-like protein

Position: -31
Score: 5.9
Sequence: AACTGTATATAAAAACAGTA
Locus tag: Ssed_2486
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
Locus tag: Ssed_2485
Name: yebR
Funciton: COG1956, GAF domain-containing protein
yebG
SOS regulon DNA damage-inducible protein
yebR
COG1956, GAF domain-containing protein

Position: -56
Score: 6
Sequence: TACTGTTTAAATATACAGTA
Locus tag: Ssed_3422
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -71
Score: 4.5
Sequence: ATATGTATATAAACACAGTG
Locus tag: Ssed_0329
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD