Regulon of LexA in Shewanella sediminis HAW-EB3
| Regulator type: | Transcription factor |
| TF locus tag: | Ssed_0200 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -39
Score: 6.1 Sequence: TACTGTATATTTATACAGTA
Locus tag: Ssed_2172
Name: umuD Funciton: DNA polymerase V, subunit UmuD
Locus tag: Ssed_2171
Name: umuC Funciton: DNA polymerase V, subunit UmuC |
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umuD
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DNA polymerase V, subunit UmuD
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umuC
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DNA polymerase V, subunit UmuC
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Position: -135
Score: 5.6 Sequence: TACTGTATGATTGTACAGTA
Locus tag: Ssed_1300
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -45
Score: 5.6 Sequence: TACTGTATATACTAACAGTT
Position: -26
Score: 5 Sequence: TACTGTATAGAAAGACAGGA
Locus tag: Ssed_0200
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Ssed_0199
Name: sulA Funciton: Cell division inhibitor sulA |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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sulA
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Cell division inhibitor sulA
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Position: -38
Score: 5.4 Sequence: TACTGGTAATTTATACAGTG
Locus tag: Ssed_1658
Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2) |
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topB
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DNA topoisomerase III (EC 5.99.1.2)
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Position: -62
Score: 5.8 Sequence: TACTGTATATAAAATCAGTA
Position: -40
Score: 5.5 Sequence: TACTGTTTAAAAACACAGTA
Locus tag: Ssed_1281
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -36
Score: 5.1 Sequence: CACTGTTATTATGTACAGCT
Locus tag: Ssed_1566
Name: dinG Funciton: ATP-dependent helicase DinG/Rad3
Locus tag: Ssed_1565
Name: SO1818 Funciton: protein of unknown function DUF81
Locus tag: Ssed_1564
Name: SO1817 Funciton: Primosomal replication protein N prime-like protein |
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dinG
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ATP-dependent helicase DinG/Rad3
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SO1818
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protein of unknown function DUF81
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SO1817
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Primosomal replication protein N prime-like protein
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Position: -31
Score: 5.9 Sequence: AACTGTATATAAAAACAGTA
Locus tag: Ssed_2486
Name: yebG Funciton: SOS regulon DNA damage-inducible protein
Locus tag: Ssed_2485
Name: yebR Funciton: COG1956, GAF domain-containing protein |
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yebG
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SOS regulon DNA damage-inducible protein
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yebR
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COG1956, GAF domain-containing protein
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Position: -56
Score: 6 Sequence: TACTGTTTAAATATACAGTA
Locus tag: Ssed_3422
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -71
Score: 4.5 Sequence: ATATGTATATAAACACAGTG
Locus tag: Ssed_0329
Name: recG Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
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recG
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ATP-dependent DNA helicase RecG (EC 3.6.1.-)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |