Profile of regulator LexA in Shewanellaceae
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_3430 | recA | -127 | 5.6 | TACTGTATGATTGTACAGTA | |
| SO_2604 | yebG | -31 | 6 | TACTGTATATAAAAACAGTG | |
| SO_3462 | recN | -72 | 5.8 | TACTGTATATAAAATCAGTA | |
| SO_3462 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| SO_3061 | topB | -32 | 5.7 | TACTGTAATTATATCCAGTA | |
| SO_4603 | lexA | -45 | 5.9 | TACTGTATATACTAACAGTA | |
| SO_4603 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| SO_1114 | dinB | -44 | 5.9 | AACTGTTTTTATATACAGTA | |
| SO_1819 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| SO_A0013 | umuD | -32 | 5.6 | AACTGTATATTTATACAGTT | |
| SO_4364 | recG | -45 | 4.3 | ATATGTATAAATTCACAGTG | |
| SO_2037 | xerD | -39 | 5.5 | TACTGTATAAAATTACAGCG | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_2747 | recA | -129 | 5.6 | TACTGTATGATTGTACAGTA | |
| Sputcn32_2205 | yebG | -30 | 6 | TACTGTATATAAAAACAGTG | |
| Sputcn32_3780 | lexA | -45 | 5.9 | TACTGTATATACTAACAGTA | |
| Sputcn32_3780 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| Sputcn32_2435 | topB | -32 | 5.6 | TACTGTAATTATATCCAGTG | |
| Sputcn32_0951 | dinB | 20 | 5.7 | TACTGGTTTTATATACAGTA | |
| Sputcn32_2771 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| Sputcn32_2771 | recN | -72 | 5.8 | TACTGTATATAAAATCAGTA | |
| Sputcn32_1513 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Sputcn32_0175 | umuD | -32 | 5.4 | AACTGTATATTTGTACAGTT | |
| Sputcn32_0450 | recG | -21 | 4.3 | ATATGTATAAATTCACAGTG | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_0135 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| Sputw3181_1804 | yebG | -30 | 6 | TACTGTATATAAAAACAGTG | |
| Sputw3181_0135 | lexA | -45 | 5.9 | TACTGTATATACTAACAGTA | |
| Sputw3181_1573 | topB | -32 | 5.6 | TACTGTAATTATATCCAGTG | |
| Sputw3181_1265 | recA | -129 | 5.6 | TACTGTATGATTGTACAGTA | |
| Sputw3181_3225 | dinB | -43 | 5.7 | TACTGGTTTTATATACAGTA | |
| Sputw3181_1241 | recN | -72 | 5.8 | TACTGTATATAAAATCAGTA | |
| Sputw3181_1241 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| Sputw3181_2587 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Sputw3181_0304 | recG | -21 | 4.3 | ATATGTATAAATTCACAGTG | |
| Sputw3181_2904 | ogr | -63 | 5.3 | TACTGTTTAAAAACACAGTG | |
| Sputw3181_1083 | umuD | -46 | 5.9 | TACTGTATAAACAAACAGTA | |
| Shewanella sp ANA-3 | |||||
| Shewana3_1126 | recA | -128 | 5.6 | TACTGTATGATTGTACAGTA | |
| Shewana3_1486 | topB | -32 | 5.4 | CACTGTAATTATATCCAGTG | |
| Shewana3_1775 | yebG | -31 | 6 | TACTGTATATAAAAACAGTG | |
| Shewana3_1104 | recN | -72 | 5.9 | TACTGTATATAAATTCAGTA | |
| Shewana3_1104 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| Shewana3_3989 | lexA | -45 | 5.9 | TACTGTATATACTAACAGTA | |
| Shewana3_3989 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| Shewana3_0949 | dinB | -44 | 6.1 | TACTGTTTTTATATACAGTA | |
| Shewana3_2630 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Shewana3_0348 | recG | -21 | 4.3 | ATATGTATAAATTCACAGTG | |
| Shewana3_1833 | umuD | 14 | 6 | TACTGTATTTACATACAGTA | |
| Shewana3_4173 | umuD | -23 | 5.9 | TACTGTATTAATGTACAGTA | |
| Shewanella sp MR-4 | |||||
| Shewmr4_1670 | yebG | -31 | 6 | TACTGTATATAAAAACAGTG | |
| Shewmr4_1104 | recN | -72 | 5.9 | TACTGTATATAAATTCAGTA | |
| Shewmr4_1104 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| Shewmr4_1433 | topB | -32 | 5.6 | CACTGTAATTATATCCAGTA | |
| Shewmr4_1125 | recA | -128 | 5.6 | TACTGTATGATTGTACAGTA | |
| Shewmr4_3789 | lexA | -45 | 5.9 | TACTGTATATACTAACAGTA | |
| Shewmr4_3789 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| Shewmr4_0947 | dinB | -44 | 6.1 | TACTGTTTTTATATACAGTA | |
| Shewmr4_2470 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Shewmr4_0354 | recG | -21 | 4.3 | ATATGTATAAATTCACAGTG | |
| Shewmr4_1782 | umuD | 14 | 6 | TACTGTACTTATATACAGTA | |
| Shewanella sp MR-7 | |||||
| Shewmr7_1196 | recA | -128 | 5.6 | TACTGTATGATTGTACAGTA | |
| Shewmr7_1170 | recN | -72 | 5.9 | TACTGTATATAAATTCAGTA | |
| Shewmr7_1170 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| Shewmr7_1745 | yebG | -31 | 6 | TACTGTATATAAAAACAGTG | |
| Shewmr7_1498 | topB | 30 | 5.6 | CACTGTAATTATATCCAGTA | |
| Shewmr7_3862 | lexA | -45 | 5.9 | TACTGTATATACTAACAGTA | |
| Shewmr7_3862 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| Shewmr7_0985 | dinB | -44 | 6.1 | TACTGTTTTTATATACAGTA | |
| Shewmr7_2538 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Shewmr7_3672 | recG | -21 | 4.3 | ATATGTATAAATTCACAGTG | |
| Shewmr7_2195 | umuD | 14 | 6.2 | TACTGTATTTATATACAGTA | |
| Shewmr7_0718 | ogr | -82 | 5.9 | TACTGTTTAAAAAAACAGTA | |
| Shewmr7_2132 | xerD | -39 | 5.4 | TACTGTATAAAACAACAGTA | |
| Shewanella baltica OS155 | |||||
| Sbal_2450 | yebG | -31 | 6 | TACTGTATATAAAAACAGTG | |
| Sbal_2736 | topB | -32 | 5.6 | TACTGTAATTATATCCAGTG | |
| Sbal_3117 | recA | -127 | 5.6 | TACTGTATGATTGTACAGTA | |
| Sbal_0156 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| Sbal_0156 | lexA | -45 | 5.9 | TACTGTATATACTAACAGTA | |
| Sbal_0935 | dinB | -43 | 6.1 | TACTGTTTTTATATACAGTA | |
| Sbal_3153 | recN | -72 | 5.8 | TACTGTATATAAAATCAGTA | |
| Sbal_3153 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| Sbal_1629 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Sbal_3554 | umuD | -30 | 5.6 | TGCTGTATATAATTACAGTG | |
| Sbal_0346 | recG | -21 | 4.3 | ATATGTATAAATTCACAGTG | |
| Sbal_1278 | ogr | -63 | 5.8 | CACTGTTTAAAAATACAGTA | |
| Sbal_2352 | umuD | -34 | 5.6 | TACTGTTCATACGTACAGTA | |
| Shewanella denitrificans OS217 | |||||
| Sden_1151 | recN | -71 | 5.4 | TACTGTATAAAAAACCAGTG | |
| Sden_1719 | yebG | -31 | 6 | CACTGTATATAAAAACAGTA | |
| Sden_3515 | lexA | -45 | 5.1 | TACTGTATATAATGACAGTC | |
| Sden_3515 | lexA | -26 | 5.1 | CACTGTATAAAAAGACAGGA | |
| Sden_2400 | topB | -41 | 5.6 | CACTGTAATTACATACAGTG | |
| Sden_1208 | recA | -203 | 5.8 | TACTGTATGATTATACAGTA | |
| Sden_1185 | dinB | -52 | 5.8 | CACTGTTTTTTTATACAGTA | |
| Sden_1151 | recN | -49 | 5.6 | TACTGTTTATCAATACAGTG | |
| Sden_2429 | dinG | -52 | 5.4 | CACTGTTATTATGTACAGCA | |
| Sden_3476 | recG | -36 | 4.8 | ATATGTATAAATTTACAGTG | |
| Sden_3236 | umuD | -29 | 6 | TACTGTATATAATTACAGTG | |
| Sden_1131 | xerC | -39 | 5.3 | AACTGTATATAAACACAGTG | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_2231 | yebG | -31 | 5.9 | CACTGTATATAAAAACAGTG | |
| Sfri_0260 | lexA | -45 | 5 | CACTGTATATAATGACAGTC | |
| Sfri_0260 | lexA | -26 | 5.1 | CACTGTATAAAAAGACAGGA | |
| Sfri_1401 | topB | -67 | 5.8 | TACTGTAAATTTATACAGTT | |
| Sfri_1062 | recA | -113 | 5.5 | TACTGTATGACTATACAGTA | |
| Sfri_0961 | dinB | -57 | 6.1 | TACTGTTTTTATATACAGTA | |
| Sfri_1043 | recN | -50 | 5.6 | TACTGTTTATCAATACAGTG | |
| Sfri_1043 | recN | -72 | 5.8 | TACTGTATATAAAATCAGTA | |
| Sfri_2630 | dinG | -51 | 5.4 | CACTGTTATTATGTACAGCA | |
| Sfri_1963 | umuD | -58 | 5.9 | TACTGTTTATTTATACAGTG | |
| Sfri_1963 | umuD | -43 | 4.8 | CAGTGTGTTTTTATACAGTA | |
| Sfri_0356 | recG | -47 | 5.3 | ATCTGTATATAATTACAGTG | |
| Shewanella amazonensis SB2B | |||||
| Sama_1026 | recN | -73 | 5.4 | TACTGTACAAAAAATCAGTA | |
| Sama_1026 | recN | -51 | 5.3 | TACTGTGTATCAATACAGTA | |
| Sama_2145 | topB | 29 | 5.3 | TACTGTAAATTCATCCAGTG | |
| Sama_1046 | recA | -115 | 5.6 | TACTGTATGATTGTACAGTA | |
| Sama_1249 | dinG | -42 | 5.4 | CACTGTTATTATGTACAGCA | |
| Sama_1582 | yebG | -31 | 5.8 | CACTGTATAAATAAACAGTG | |
| Sama_3481 | lexA | -45 | 5.6 | TACTGTATATACTGACAGTA | |
| Sama_3481 | lexA | -26 | 5 | AACTGTATAGAAAAACAGGA | |
| Sama_2527 | dinB | -36 | 6.1 | TACTGTTTTTATATACAGTA | |
| Sama_3375 | recG | -36 | 4.4 | ATATGTATAAATTCACAGTA | |
| Sama_1865 | imuA | -66 | 5.9 | TACTGTATAAATATACAGTT | |
| Sama_1355 | xerD | -38 | 5.9 | TACTGTTTTTATATACAGTT | |
| Sama_1633 | xerD | -34 | 5.4 | CACTGTACGTACATACAGTT | |
| Shewanella loihica PV-4 | |||||
| Shew_1196 | recN | -62 | 5.7 | TACTGTATAAAAATTCAGTA | |
| Shew_1196 | recN | -40 | 4.9 | TACTGTGCATGAATACAGTA | |
| Shew_2299 | topB | -32 | 5.9 | TACTGTTAATTTATACAGTA | |
| Shew_1799 | yebG | -31 | 5.7 | AACTGTATATAAAAACAGTG | |
| Shew_1215 | recA | -127 | 5.6 | TACTGTATGATTGTACAGTA | |
| Shew_0127 | lexA | -45 | 4.9 | TACTGTATATACTGACAGGT | |
| Shew_0127 | lexA | -26 | 4.8 | TACTGTATGGAAAGACAGGA | |
| Shew_2871 | dinB | -43 | 5.9 | TACTGTTTAAATGTACAGTA | |
| Shew_2483 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Shew_3507 | recG | -71 | 5.1 | ATATGTATATATTTACAGTA | |
| Shew_2102 | imuA | -145 | 6.1 | TACTGTATTTATATACAGTG | |
| Shew_3147 | xerC | -299 | 5.5 | CGCTGTTTATTTATACAGTG | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_1169 | recN | -40 | 5.3 | TACTGTTTAACCATACAGTG | |
| Spea_3092 | dinB | -44 | 6.1 | TACTGTTTTTATATACAGTA | |
| Spea_1169 | recN | -62 | 5.9 | TACTGTATGAATAAACAGTA | |
| Spea_1625 | topB | -36 | 5.9 | TACTGTTAATTTATACAGTA | |
| Spea_1932 | yebG | -31 | 5.9 | CACTGTATATAAAAACAGTG | |
| Spea_1195 | recA | -124 | 5.6 | TACTGTATGATTGTACAGTA | |
| Spea_3997 | lexA | -45 | 5.2 | TACTGTATATACTAACAGGT | |
| Spea_3997 | lexA | -26 | 4.9 | TACTGTATAGAAAGACAGGG | |
| Spea_2656 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Spea_2196 | umuD | -34 | 5.7 | TACTGTATAAACATACAGTT | |
| Spea_3884 | recG | -21 | 4.8 | ATATGTATAAATTTACAGTG | |
| Spea_2629 | xerC | -100 | 5.3 | AACTGTATGTATATACAGCT | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_1212 | recN | -62 | 5.8 | TACTGTATAGATAAACAGTA | |
| Shal_1212 | recN | -40 | 5.5 | TACTGTTTAACTATACAGTG | |
| Shal_2636 | topB | -36 | 5.9 | TACTGTTAATTTATACAGTA | |
| Shal_1232 | recA | -124 | 5.6 | TACTGTATGATTGTACAGTA | |
| Shal_3176 | dinB | -44 | 6.1 | TACTGTTTTTATATACAGTA | |
| Shal_2367 | yebG | -31 | 6 | TACTGTATATAAAAACAGTG | |
| Shal_0260 | lexA | -45 | 4.9 | TACTGTATATACTGACAGGT | |
| Shal_0260 | lexA | -26 | 4.9 | TACTGTATAGAAAGACAGGG | |
| Shal_2730 | dinG | -43 | 5.4 | CACTGTTATTATGTACAGCA | |
| Shal_2184 | umuD | -34 | 5.9 | TACTGTATAAAAATACAGTG | |
| Shal_2170 | umuD | -35 | 5.7 | TACTGTACAAATATACAGTT | |
| Shal_0385 | recG | -21 | 4.8 | ATATGTATAAATTTACAGTG | |
| Shal_1316 | ogr | -63 | 5.3 | TACTGTTCAAAAACACAGTA | |
| Shal_1634 | xerC | -35 | 5.7 | TACTGTATAGATAAACAGTG | |
| Shewanella piezotolerans WP3 | |||||
| swp_1346 | recN | -61 | 5.7 | TACTGTATAGAAAAACAGTA | |
| swp_1346 | recN | -39 | 5.6 | TACTGTTTATCAATACAGTG | |
| swp_3111 | topB | -36 | 5.8 | TACTGTTAATTTATACAGTG | |
| swp_2821 | yebG | 11 | 6 | TACTGTATATAAAAACAGTG | |
| swp_1366 | recA | -123 | 5.6 | TACTGTATGATTGTACAGTA | |
| swp_4821 | lexA | -45 | 5.2 | TACTGTATATACTAACAGGT | |
| swp_4821 | lexA | -26 | 5 | TACTGTATAGAAAAACAGGT | |
| swp_1179 | dinB | -95 | 6.1 | TACTGTTTTTATATACAGTA | |
| swp_3212 | dinG | -10 | 5.4 | CACTGTTATTATGTACAGCA | |
| swp_0309 | recG | -21 | 4.8 | ATATGTATAAATTTACAGTG | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_1281 | recN | -40 | 5.5 | TACTGTTTAAAAACACAGTA | |
| Ssed_1300 | recA | -135 | 5.6 | TACTGTATGATTGTACAGTA | |
| Ssed_2486 | yebG | -31 | 5.9 | AACTGTATATAAAAACAGTA | |
| Ssed_0200 | lexA | -45 | 5.6 | TACTGTATATACTAACAGTT | |
| Ssed_1281 | recN | -62 | 5.8 | TACTGTATATAAAATCAGTA | |
| Ssed_1658 | topB | -38 | 5.4 | TACTGGTAATTTATACAGTG | |
| Ssed_0200 | lexA | -26 | 5 | TACTGTATAGAAAGACAGGA | |
| Ssed_3422 | dinB | -56 | 6 | TACTGTTTAAATATACAGTA | |
| Ssed_1566 | dinG | -36 | 5.1 | CACTGTTATTATGTACAGCT | |
| Ssed_2172 | umuD | -39 | 6.1 | TACTGTATATTTATACAGTA | |
| Ssed_0329 | recG | -71 | 4.5 | ATATGTATATAAACACAGTG | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_3340 | recA | -124 | 5.5 | TACTGTATGACTATACAGTA | |
| Swoo_3359 | recN | -64 | 5.9 | TACTGTATTTATGAACAGTA | |
| Swoo_3359 | recN | -42 | 5.9 | TACTGTTCATAAATACAGTA | |
| Swoo_2976 | topB | -35 | 5.4 | TACTGGTAATTTATACAGTG | |
| Swoo_0180 | lexA | -26 | 5 | TACTGTATAGAAAGACAGGA | |
| Swoo_3604 | dinB | -52 | 6 | CACTGTTTTTATATACAGTA | |
| Swoo_2130 | yebG | -31 | 5.9 | AACTGTATATAAAAACAGTA | |
| Swoo_0180 | lexA | -45 | 5.3 | TACTGTATATACTGACAGTT | |
| Swoo_3086 | dinG | -37 | 5.1 | CACTGTTATTATGTACAGCT | |
| Swoo_2465 | umuD | -38 | 5.3 | TACTGTATAAAAACACAGTT | |
| Swoo_4592 | recG | -68 | 5 | ATATGTATATAAATACAGTG | |
| Swoo_4307 | xerD | -48 | 5.8 | CACTGTTTTTTTATACAGTA | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |