Regulon of NtrC in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_0282
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	5
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -151 Score: 5.1 Sequence: CGCACTTGTTTGGTGCA Locus tag: Ssed_0933 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: Ssed_0934 Name: amtB Funciton: ammonium transporter
	Ssed_0933	glnB	nitrogen regulatory protein P-II 1
	Ssed_0934	amtB	ammonium transporter
Position: -51 Score: 6.3 Sequence: TGCACCAATTTGGTGCA Position: -38 Score: 6 Sequence: TGCACCATGATGGTGCA Locus tag: Ssed_0283 Name: ntrB Funciton: nitrogen regulation protein Locus tag: Ssed_0282 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	Ssed_0283	ntrB	nitrogen regulation protein
	Ssed_0282	ntrC	nitrogen regulation protein NR(I)
Position: -227 Score: 4.7 Sequence: CGCACCAGCTTGGTGAG Position: -188 Score: 5.5 Sequence: CGCACCAACTTAGTGCA Locus tag: Ssed_0292 Name: glnA Funciton: glutamine synthetase, type I
	Ssed_0292	glnA	glutamine synthetase, type I

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD