Regulon of NtrC in Shewanella sediminis HAW-EB3
| Regulator type: | Transcription factor |
| TF locus tag: | Ssed_0282 |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 3 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -151
Score: 5.1 Sequence: CGCACTTGTTTGGTGCA
Locus tag: Ssed_0933
Name: glnB Funciton: nitrogen regulatory protein P-II 1
Locus tag: Ssed_0934
Name: amtB Funciton: ammonium transporter |
|||
|
glnB
|
nitrogen regulatory protein P-II 1
|
||
|
amtB
|
ammonium transporter
|
||
|
Position: -51
Score: 6.3 Sequence: TGCACCAATTTGGTGCA
Position: -38
Score: 6 Sequence: TGCACCATGATGGTGCA
Locus tag: Ssed_0283
Name: ntrB Funciton: nitrogen regulation protein
Locus tag: Ssed_0282
Name: ntrC Funciton: nitrogen regulation protein NR(I) |
|||
|
ntrB
|
nitrogen regulation protein
|
||
|
ntrC
|
nitrogen regulation protein NR(I)
|
||
|
Position: -227
Score: 4.7 Sequence: CGCACCAGCTTGGTGAG
Position: -188
Score: 5.5 Sequence: CGCACCAACTTAGTGCA
Locus tag: Ssed_0292
Name: glnA Funciton: glutamine synthetase, type I |
|||
|
glnA
|
glutamine synthetase, type I
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |