Regulog NtrC - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	6	4
Shewanella putrefaciens CN-32	6	4
Shewanella sp W3-18-1	6	4
Shewanella sp ANA-3	7	4
Shewanella sp MR-4	7	4
Shewanella sp MR-7	7	4
Shewanella baltica OS155	7	4
Shewanella denitrificans OS217	5	3
Shewanella frigidimarina NCIMB 400	5	3
Shewanella amazonensis SB2B	5	3
Shewanella loihica PV-4	5	3
Shewanella pealeana ATCC 700345	5	3
Shewanella halifaxensis HAW-EB4	5	3
Shewanella piezotolerans WP3	5	3
Shewanella sediminis HAW-EB3	5	3
Shewanella woodyi ATCC 51908	7	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
glnK2	* Shewanella oneidensis MR-1 Site: position = -181 score = 5.29806 sequence = TGCACCAAAATCGCGCA Site: position = -168 score = 4.8082 sequence = CGCACCAAATCAGGGCA Gene: SO_3819: nitrogen regulatory protein P-II	* Shewanella putrefaciens CN-32 Site: position = -96 score = 5.66249 sequence = TGCACCTGTATGGTGCA Site: position = -109 score = 4.55667 sequence = TGCACTGAAATAATGCA Gene: Sputcn32_0815: nitrogen regulatory protein P-II	* Shewanella sp W3-18-1 Site: position = -109 score = 4.98149 sequence = TGCACCGAAATAATGCA Site: position = -96 score = 5.38637 sequence = TGCACCTATATGGAGCA Gene: Sputw3181_3358: nitrogen regulatory protein P-II	* Shewanella sp ANA-3 Site: position = -182 score = 4.75393 sequence = TGCACCATCACAGCGCA Site: position = -169 score = 5.00371 sequence = CGCACCAAATCGGGGCG Gene: Shewana3_0779: nitrogen regulatory protein P-II	* Shewanella sp MR-4 Site: position = -182 score = 4.75393 sequence = TGCACCATCACAGCGCA Site: position = -169 score = 5.00371 sequence = CGCACCAAATCGGGGCG Gene: Shewmr4_3159: nitrogen regulatory protein P-II	* Shewanella sp MR-7 Site: position = -169 score = 5.00371 sequence = CGCACCAAATCGGGGCG Gene: Shewmr7_0808: nitrogen regulatory protein P-II	* Shewanella baltica OS155 Site: position = -168 score = 4.57888 sequence = CGCACCAAATCAGGGCG Gene: Sbal_0707: nitrogen regulatory protein P-II	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	* Shewanella woodyi ATCC 51908 Site: position = -140 score = 5.2445 sequence = TGCACCATGGTGATGCA Gene: Swoo_1181: nitrogen regulatory protein P-II	nitrogen regulatory protein P-II
amtB2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3 Gene: Shewana3_0778: ammonium transporter	Shewanella sp MR-4 Gene: Shewmr4_3160: ammonium transporter	Shewanella sp MR-7 Gene: Shewmr7_0807: ammonium transporter	Shewanella baltica OS155 Gene: Sbal_0706: ammonium transporter	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908 Gene: Swoo_1182: ammonium transporter	ammonium transporter

CRON 2.
glnB	* Shewanella oneidensis MR-1 Site: position = -142 score = 5.45331 sequence = TGCACAATTCTGGTGCA Gene: SO_0761: nitrogen regulatory protein P-II 1	* Shewanella putrefaciens CN-32 Site: position = -143 score = 5.50208 sequence = TGCACAAATGTGGTGCA Gene: Sputcn32_3241: nitrogen regulatory protein P-II 1	* Shewanella sp W3-18-1 Site: position = -143 score = 5.50208 sequence = TGCACAAATGTGGTGCA Gene: Sputw3181_0700: nitrogen regulatory protein P-II 1	* Shewanella sp ANA-3 Site: position = -143 score = 5.21702 sequence = TGCACAAGTCTGGTGCA Gene: Shewana3_3532: nitrogen regulatory protein P-II 1	* Shewanella sp MR-4 Site: position = -143 score = 5.21702 sequence = TGCACAAGTCTGGTGCA Gene: Shewmr4_3362: nitrogen regulatory protein P-II 1	* Shewanella sp MR-7 Site: position = -143 score = 5.21702 sequence = TGCACAAGTCTGGTGCA Gene: Shewmr7_0591: nitrogen regulatory protein P-II 1	* Shewanella baltica OS155 Site: position = -144 score = 5.06323 sequence = TGCTCGATCATGGTGCA Gene: Sbal_0797: nitrogen regulatory protein P-II 1	* Shewanella denitrificans OS217 Site: position = -152 score = 5.71823 sequence = CGCACCTTATTGGTGCA Site: position = -195 score = 5.15008 sequence = TGCGCCACTTAGGTGCA Gene: Sden_2905: nitrogen regulatory protein P-II 1	* Shewanella frigidimarina NCIMB 400 Site: position = -183 score = 5.40632 sequence = TGCACCAAAACGATGCA Gene: Sfri_0623: nitrogen regulatory protein P-II 1	* Shewanella amazonensis SB2B Site: position = -172 score = 5.63239 sequence = TGCACCACCTTGGTGCG Site: position = -142 score = 4.74771 sequence = TGCACTTTTTTTGTGCG Gene: Sama_0650: nitrogen regulatory protein P-II 1	* Shewanella loihica PV-4 Site: position = -172 score = 4.52304 sequence = TGCGCTATTTTTGTGCG Site: position = -142 score = 5.76699 sequence = CGCACCTAATTGGTGCA Gene: Shew_0846: nitrogen regulatory protein P-II 1	* Shewanella pealeana ATCC 700345 Site: position = -135 score = 5.47643 sequence = TGCACCTTGCTGGTGCA Gene: Spea_0833: nitrogen regulatory protein P-II 1	* Shewanella halifaxensis HAW-EB4 Site: position = -137 score = 4.69778 sequence = CGCACTCGAATGGTGCA Gene: Shal_0888: nitrogen regulatory protein P-II 1	* Shewanella piezotolerans WP3 Site: position = -136 score = 5.4007 sequence = TGCACCCGATTGGTGCA Gene: swp_3956: nitrogen regulatory protein P-II 1	* Shewanella sediminis HAW-EB3 Site: position = -151 score = 5.05711 sequence = CGCACTTGTTTGGTGCA Gene: Ssed_0933: nitrogen regulatory protein P-II 1	* Shewanella woodyi ATCC 51908 Site: position = -143 score = 5.44014 sequence = CGCACCTTAATGGTGCG Site: position = -173 score = 4.61269 sequence = TGCGCTAATTCCGTGCA Gene: Swoo_0979: nitrogen regulatory protein P-II 1	nitrogen regulatory protein P-II 1
amtB	Shewanella oneidensis MR-1 Gene: SO_0760: ammonium transporter	Shewanella putrefaciens CN-32 Gene: Sputcn32_3240: ammonium transporter	Shewanella sp W3-18-1 Gene: Sputw3181_0701: ammonium transporter	Shewanella sp ANA-3 Gene: Shewana3_3531: ammonium transporter	Shewanella sp MR-4 Gene: Shewmr4_3361: ammonium transporter	Shewanella sp MR-7 Gene: Shewmr7_0592: ammonium transporter	Shewanella baltica OS155 Gene: Sbal_0798: ammonium transporter	Shewanella denitrificans OS217 Gene: Sden_2904: ammonium transporter	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0624: ammonium transporter	Shewanella amazonensis SB2B Gene: Sama_0651: ammonium transporter	Shewanella loihica PV-4 Gene: Shew_0847: ammonium transporter	Shewanella pealeana ATCC 700345 Gene: Spea_0834: ammonium transporter	Shewanella halifaxensis HAW-EB4 Gene: Shal_0889: ammonium transporter	Shewanella piezotolerans WP3 Gene: swp_3955: ammonium transporter	Shewanella sediminis HAW-EB3 Gene: Ssed_0934: ammonium transporter	Shewanella woodyi ATCC 51908 Gene: Swoo_0980: ammonium transporter	ammonium transporter

CRON 3.
glnA	* Shewanella oneidensis MR-1 Site: position = -246 score = 4.60776 sequence = TGCACTAAAATGGGGGA Site: position = -179 score = 5.36387 sequence = TGCACCAACACAGTGCA Gene: SO_4410: glutamine synthetase, type I	* Shewanella putrefaciens CN-32 Site: position = -184 score = 5.39509 sequence = CGCACCATCATAGTGCA Gene: Sputcn32_0412: glutamine synthetase, type I	* Shewanella sp W3-18-1 Site: position = -184 score = 5.58115 sequence = CGCACCATTATAGTGCA Gene: Sputw3181_0266: glutamine synthetase, type I	* Shewanella sp ANA-3 Site: position = -247 score = 4.6402 sequence = TGCACTAAAATGGTGTT Site: position = -180 score = 5.62991 sequence = CGCACCAATATAGTGCA Gene: Shewana3_0300: glutamine synthetase, type I	* Shewanella sp MR-4 Site: position = -180 score = 5.75533 sequence = AGCACCAATATGGTGCA Site: position = -247 score = 4.6402 sequence = TGCACTAAAATGGTGTT Gene: Shewmr4_0305: glutamine synthetase, type I	* Shewanella sp MR-7 Site: position = -183 score = 5.56927 sequence = AGCACCAACATGGTGCA Gene: Shewmr7_3719: glutamine synthetase, type I	* Shewanella baltica OS155 Site: position = -183 score = 5.47027 sequence = AGCACCATAGTGGTGCA Gene: Sbal_0306: glutamine synthetase, type I	* Shewanella denitrificans OS217 Site: position = -228 score = 5.01626 sequence = TGCACCATTATGGTGAT Site: position = -251 score = 5.69668 sequence = TGCACCATAACGGTGCG Gene: Sden_3454: glutamine synthetase, type I	* Shewanella frigidimarina NCIMB 400 Site: position = -197 score = 5.43688 sequence = TGCACGAGGTTGGTGCA Gene: Sfri_0325: glutamine synthetase, type I	* Shewanella amazonensis SB2B Site: position = -192 score = 5.46235 sequence = TGCCCCGATTTGGTGCA Site: position = -214 score = 5.09366 sequence = CGCACCAACATTGTGCG Site: position = -244 score = 4.90552 sequence = TGCACCTTTATCATGCA Gene: Sama_3416: glutamine synthetase, type I	* Shewanella loihica PV-4 Site: position = -178 score = 5.89879 sequence = TGCACCTTTATGGTGCA Site: position = -217 score = 5.36444 sequence = CGCACCATATTGGTGAA Gene: Shew_3554: glutamine synthetase, type I	* Shewanella pealeana ATCC 700345 Site: position = -202 score = 4.68881 sequence = TGCACCATATAGATCCA Site: position = -180 score = 5.82542 sequence = CGCACCAAAATGGTGCG Gene: Spea_3916: glutamine synthetase, type I	* Shewanella halifaxensis HAW-EB4 Site: position = -180 score = 5.40059 sequence = CGCACCAAAATAGTGCG Gene: Shal_0353: glutamine synthetase, type I	* Shewanella piezotolerans WP3 Site: position = -218 score = 4.68085 sequence = TGCACGATTATGAAGCA Site: position = -201 score = 4.796 sequence = CGCACCAAAATGATCCA Site: position = -179 score = 4.93408 sequence = CGCACCATTAGAGTGCA Gene: swp_0268: glutamine synthetase, type I	* Shewanella sediminis HAW-EB3 Site: position = -227 score = 4.71276 sequence = CGCACCAGCTTGGTGAG Site: position = -188 score = 5.49262 sequence = CGCACCAACTTAGTGCA Gene: Ssed_0292: glutamine synthetase, type I	* Shewanella woodyi ATCC 51908 Site: position = -216 score = 4.664 sequence = CGCACCAGGATGGTGAG Site: position = -199 score = 5.01997 sequence = CGCACCATTATCGGGCA Site: position = -177 score = 5.39362 sequence = CGCACCAAACTAGTGCA Gene: Swoo_4643: glutamine synthetase, type I	glutamine synthetase, type I

CRON 4.
ntrB	* Shewanella oneidensis MR-1 Site: position = -52 score = 6.02353 sequence = TGCACCAAATCGGTGCA Site: position = -39 score = 4.90145 sequence = TGCAACATAAGGGTGCA Gene: SO_4471: nitrogen regulation protein	* Shewanella putrefaciens CN-32 Site: position = -52 score = 6.02353 sequence = TGCACCAAATCGGTGCA Site: position = -39 score = 4.96112 sequence = TGCATCATGTTGATGCA Gene: Sputcn32_0372: nitrogen regulation protein	* Shewanella sp W3-18-1 Site: position = -52 score = 6.02353 sequence = TGCACCAAATCGGTGCA Site: position = -39 score = 4.96112 sequence = TGCATCATGTTGATGCA Gene: Sputw3181_0222: nitrogen regulation protein	* Shewanella sp ANA-3 Site: position = -52 score = 6.02353 sequence = TGCACCAAATCGGTGCA Site: position = -39 score = 5.54852 sequence = TGCAACATAATGGTGCA Gene: Shewana3_0259: nitrogen regulation protein	* Shewanella sp MR-4 Site: position = -39 score = 5.54852 sequence = TGCAACATAATGGTGCA Site: position = -52 score = 6.02353 sequence = TGCACCAAATCGGTGCA Gene: Shewmr4_0258: nitrogen regulation protein	* Shewanella sp MR-7 Site: position = -39 score = 5.54852 sequence = TGCAACATAATGGTGCA Site: position = -52 score = 6.02353 sequence = TGCACCAAATCGGTGCA Gene: Shewmr7_3763: nitrogen regulation protein	* Shewanella baltica OS155 Site: position = -52 score = 5.48659 sequence = TGCACCAGATTGGCGCA Site: position = -39 score = 5.76968 sequence = CGCACCATAGTGGTGCA Gene: Sbal_0267: nitrogen regulation protein	* Shewanella denitrificans OS217 Site: position = -79 score = 5.99901 sequence = TGCACCATAGTGGTGCA Site: position = -52 score = 5.76968 sequence = TGCACCACAATGGTGCG Gene: Sden_3457: nitrogen regulation protein	* Shewanella frigidimarina NCIMB 400 Site: position = -37 score = 5.66686 sequence = TGCATCATAATGGTGCA Site: position = -50 score = 6.10351 sequence = CGCACCAAATTGGTGCA Gene: Sfri_0321: nitrogen regulation protein	* Shewanella amazonensis SB2B Site: position = -38 score = 6.28406 sequence = TGCACCATATTGGTGCA Site: position = -51 score = 6.28406 sequence = TGCACCATATTGGTGCA Gene: Sama_3426: nitrogen regulation protein	* Shewanella loihica PV-4 Site: position = -52 score = 6.33283 sequence = TGCACCAAATTGGTGCA Site: position = -39 score = 6.2353 sequence = TGCACCATTATGGTGCA Gene: Shew_3560: nitrogen regulation protein	* Shewanella pealeana ATCC 700345 Site: position = -79 score = 5.97476 sequence = TGCACCATTTCGGTGCA Gene: Spea_3929: nitrogen regulation protein	* Shewanella halifaxensis HAW-EB4 Site: position = -66 score = 5.76968 sequence = TGCACCATAGTGGTGCG Site: position = -79 score = 6.04777 sequence = TGCACCACTTTGGTGCA Gene: Shal_0342: nitrogen regulation protein	* Shewanella piezotolerans WP3 Site: position = -79 score = 6.05474 sequence = CGCACCATTTTGGTGCA Site: position = -66 score = 5.99901 sequence = TGCACCATAGTGGTGCA Site: position = -39 score = 4.80326 sequence = CGTTCCAAAATGGTGCA Gene: swp_0250: nitrogen regulation protein	* Shewanella sediminis HAW-EB3 Site: position = -51 score = 6.33283 sequence = TGCACCAATTTGGTGCA Site: position = -38 score = 6.04924 sequence = TGCACCATGATGGTGCA Gene: Ssed_0283: nitrogen regulation protein	* Shewanella woodyi ATCC 51908 Site: position = -51 score = 5.62294 sequence = TGCACTAGTTTGGTGCA Site: position = -38 score = 6.2353 sequence = TGCACCATAATGGTGCA Gene: Swoo_4650: nitrogen regulation protein	nitrogen regulation protein
ntrC	Shewanella oneidensis MR-1 Gene: SO_4472: nitrogen regulation protein NR(I)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0371: nitrogen regulation protein NR(I)	Shewanella sp W3-18-1 Gene: Sputw3181_0221: nitrogen regulation protein NR(I)	Shewanella sp ANA-3 Gene: Shewana3_0258: nitrogen regulation protein NR(I)	Shewanella sp MR-4 Gene: Shewmr4_0257: nitrogen regulation protein NR(I)	Shewanella sp MR-7 Gene: Shewmr7_3764: nitrogen regulation protein NR(I)	Shewanella baltica OS155 Gene: Sbal_0266: nitrogen regulation protein NR(I)	Shewanella denitrificans OS217 Gene: Sden_3458: nitrogen regulation protein NR(I)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0320: nitrogen regulation protein NR(I)	Shewanella amazonensis SB2B Gene: Sama_3427: nitrogen regulation protein NR(I)	Shewanella loihica PV-4 Gene: Shew_3561: nitrogen regulation protein NR(I)	Shewanella pealeana ATCC 700345 Gene: Spea_3930: nitrogen regulation protein NR(I)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0341: nitrogen regulation protein NR(I)	Shewanella piezotolerans WP3 Gene: swp_0249: nitrogen regulation protein NR(I)	Shewanella sediminis HAW-EB3 Gene: Ssed_0282: nitrogen regulation protein NR(I)	Shewanella woodyi ATCC 51908 Gene: Swoo_4651: nitrogen regulation protein NR(I)	nitrogen regulation protein NR(I)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NtrC - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --