Regulon of NtrC in Shewanella halifaxensis HAW-EB4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shal_0341
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	5
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -137 Score: 4.7 Sequence: CGCACTCGAATGGTGCA Locus tag: Shal_0888 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: Shal_0889 Name: amtB Funciton: ammonium transporter
	Shal_0888	glnB	nitrogen regulatory protein P-II 1
	Shal_0889	amtB	ammonium transporter
Position: -79 Score: 6 Sequence: TGCACCACTTTGGTGCA Position: -66 Score: 5.8 Sequence: TGCACCATAGTGGTGCG Locus tag: Shal_0342 Name: ntrB Funciton: nitrogen regulation protein Locus tag: Shal_0341 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	Shal_0342	ntrB	nitrogen regulation protein
	Shal_0341	ntrC	nitrogen regulation protein NR(I)
Position: -180 Score: 5.4 Sequence: CGCACCAAAATAGTGCG Locus tag: Shal_0353 Name: glnA Funciton: glutamine synthetase, type I
	Shal_0353	glnA	glutamine synthetase, type I

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD