Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Profile of regulator NtrC in Shewanellaceae

Properties
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO_0761 glnB -142 5.5 TGCACAATTCTGGTGCA
SO_3819 glnK2 -181 5.3 TGCACCAAAATCGCGCA
SO_4410 glnA -246 4.6 TGCACTAAAATGGGGGA
SO_4410 glnA -179 5.4 TGCACCAACACAGTGCA
SO_3819 glnK2 -168 4.8 CGCACCAAATCAGGGCA
SO_4471 ntrB -52 6 TGCACCAAATCGGTGCA
SO_4471 ntrB -39 4.9 TGCAACATAAGGGTGCA
Shewanella putrefaciens CN-32
Sputcn32_3241 glnB -143 5.5 TGCACAAATGTGGTGCA
Sputcn32_0412 glnA -184 5.4 CGCACCATCATAGTGCA
Sputcn32_0815 glnK2 -96 5.7 TGCACCTGTATGGTGCA
Sputcn32_0815 glnK2 -109 4.6 TGCACTGAAATAATGCA
Sputcn32_0372 ntrB -52 6 TGCACCAAATCGGTGCA
Sputcn32_0372 ntrB -39 5 TGCATCATGTTGATGCA
Shewanella sp W3-18-1
Sputw3181_3358 glnK2 -109 5 TGCACCGAAATAATGCA
Sputw3181_3358 glnK2 -96 5.4 TGCACCTATATGGAGCA
Sputw3181_0266 glnA -184 5.6 CGCACCATTATAGTGCA
Sputw3181_0700 glnB -143 5.5 TGCACAAATGTGGTGCA
Sputw3181_0222 ntrB -52 6 TGCACCAAATCGGTGCA
Sputw3181_0222 ntrB -39 5 TGCATCATGTTGATGCA
Shewanella sp ANA-3
Shewana3_3532 glnB -143 5.2 TGCACAAGTCTGGTGCA
Shewana3_0300 glnA -247 4.6 TGCACTAAAATGGTGTT
Shewana3_0300 glnA -180 5.6 CGCACCAATATAGTGCA
Shewana3_0779 glnK2 -182 4.8 TGCACCATCACAGCGCA
Shewana3_0779 glnK2 -169 5 CGCACCAAATCGGGGCG
Shewana3_0259 ntrB -52 6 TGCACCAAATCGGTGCA
Shewana3_0259 ntrB -39 5.5 TGCAACATAATGGTGCA
Shewanella sp MR-4
Shewmr4_3362 glnB -143 5.2 TGCACAAGTCTGGTGCA
Shewmr4_3159 glnK2 -182 4.8 TGCACCATCACAGCGCA
Shewmr4_3159 glnK2 -169 5 CGCACCAAATCGGGGCG
Shewmr4_0305 glnA -180 5.8 AGCACCAATATGGTGCA
Shewmr4_0305 glnA -247 4.6 TGCACTAAAATGGTGTT
Shewmr4_0258 ntrB -39 5.5 TGCAACATAATGGTGCA
Shewmr4_0258 ntrB -52 6 TGCACCAAATCGGTGCA
Shewanella sp MR-7
Shewmr7_0591 glnB -143 5.2 TGCACAAGTCTGGTGCA
Shewmr7_3719 glnA -183 5.6 AGCACCAACATGGTGCA
Shewmr7_0808 glnK2 -169 5 CGCACCAAATCGGGGCG
Shewmr7_3763 ntrB -39 5.5 TGCAACATAATGGTGCA
Shewmr7_3763 ntrB -52 6 TGCACCAAATCGGTGCA
Shewanella baltica OS155
Sbal_0797 glnB -144 5.1 TGCTCGATCATGGTGCA
Sbal_0707 glnK2 -168 4.6 CGCACCAAATCAGGGCG
Sbal_0306 glnA -183 5.5 AGCACCATAGTGGTGCA
Sbal_0267 ntrB -52 5.5 TGCACCAGATTGGCGCA
Sbal_0267 ntrB -39 5.8 CGCACCATAGTGGTGCA
Shewanella denitrificans OS217
Sden_3454 glnA -228 5 TGCACCATTATGGTGAT
Sden_3454 glnA -251 5.7 TGCACCATAACGGTGCG
Sden_2905 glnB -152 5.7 CGCACCTTATTGGTGCA
Sden_2905 glnB -195 5.2 TGCGCCACTTAGGTGCA
Sden_3457 ntrB -79 6 TGCACCATAGTGGTGCA
Sden_3457 ntrB -52 5.8 TGCACCACAATGGTGCG
Shewanella frigidimarina NCIMB 400
Sfri_0623 glnB -183 5.4 TGCACCAAAACGATGCA
Sfri_0325 glnA -197 5.4 TGCACGAGGTTGGTGCA
Sfri_0321 ntrB -37 5.7 TGCATCATAATGGTGCA
Sfri_0321 ntrB -50 6.1 CGCACCAAATTGGTGCA
Shewanella amazonensis SB2B
Sama_0650 glnB -172 5.6 TGCACCACCTTGGTGCG
Sama_0650 glnB -142 4.7 TGCACTTTTTTTGTGCG
Sama_3416 glnA -192 5.5 TGCCCCGATTTGGTGCA
Sama_3416 glnA -214 5.1 CGCACCAACATTGTGCG
Sama_3416 glnA -244 4.9 TGCACCTTTATCATGCA
Sama_3426 ntrB -38 6.3 TGCACCATATTGGTGCA
Sama_3426 ntrB -51 6.3 TGCACCATATTGGTGCA
Shewanella loihica PV-4
Shew_0846 glnB -172 4.5 TGCGCTATTTTTGTGCG
Shew_0846 glnB -142 5.8 CGCACCTAATTGGTGCA
Shew_3554 glnA -178 5.9 TGCACCTTTATGGTGCA
Shew_3554 glnA -217 5.4 CGCACCATATTGGTGAA
Shew_3560 ntrB -52 6.3 TGCACCAAATTGGTGCA
Shew_3560 ntrB -39 6.2 TGCACCATTATGGTGCA
Shewanella pealeana ATCC 700345
Spea_0833 glnB -135 5.5 TGCACCTTGCTGGTGCA
Spea_3916 glnA -202 4.7 TGCACCATATAGATCCA
Spea_3916 glnA -180 5.8 CGCACCAAAATGGTGCG
Spea_3929 ntrB -79 6 TGCACCATTTCGGTGCA
Shewanella halifaxensis HAW-EB4
Shal_0888 glnB -137 4.7 CGCACTCGAATGGTGCA
Shal_0353 glnA -180 5.4 CGCACCAAAATAGTGCG
Shal_0342 ntrB -66 5.8 TGCACCATAGTGGTGCG
Shal_0342 ntrB -79 6 TGCACCACTTTGGTGCA
Shewanella piezotolerans WP3
swp_3956 glnB -136 5.4 TGCACCCGATTGGTGCA
swp_0268 glnA -218 4.7 TGCACGATTATGAAGCA
swp_0268 glnA -201 4.8 CGCACCAAAATGATCCA
swp_0268 glnA -179 4.9 CGCACCATTAGAGTGCA
swp_0250 ntrB -79 6.1 CGCACCATTTTGGTGCA
swp_0250 ntrB -66 6 TGCACCATAGTGGTGCA
swp_0250 ntrB -39 4.8 CGTTCCAAAATGGTGCA
Shewanella sediminis HAW-EB3
Ssed_0933 glnB -151 5.1 CGCACTTGTTTGGTGCA
Ssed_0292 glnA -227 4.7 CGCACCAGCTTGGTGAG
Ssed_0292 glnA -188 5.5 CGCACCAACTTAGTGCA
Ssed_0283 ntrB -51 6.3 TGCACCAATTTGGTGCA
Ssed_0283 ntrB -38 6 TGCACCATGATGGTGCA
Shewanella woodyi ATCC 51908
Swoo_1181 glnK2 -140 5.2 TGCACCATGGTGATGCA
Swoo_4643 glnA -216 4.7 CGCACCAGGATGGTGAG
Swoo_4643 glnA -199 5 CGCACCATTATCGGGCA
Swoo_4643 glnA -177 5.4 CGCACCAAACTAGTGCA
Swoo_0979 glnB -143 5.4 CGCACCTTAATGGTGCG
Swoo_0979 glnB -173 4.6 TGCGCTAATTCCGTGCA
Swoo_4650 ntrB -51 5.6 TGCACTAGTTTGGTGCA
Swoo_4650 ntrB -38 6.2 TGCACCATAATGGTGCA
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