Profile of regulator NtrC in Shewanellaceae
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_0761 | glnB | -142 | 5.5 | TGCACAATTCTGGTGCA | |
| SO_3819 | glnK2 | -181 | 5.3 | TGCACCAAAATCGCGCA | |
| SO_4410 | glnA | -246 | 4.6 | TGCACTAAAATGGGGGA | |
| SO_4410 | glnA | -179 | 5.4 | TGCACCAACACAGTGCA | |
| SO_3819 | glnK2 | -168 | 4.8 | CGCACCAAATCAGGGCA | |
| SO_4471 | ntrB | -52 | 6 | TGCACCAAATCGGTGCA | |
| SO_4471 | ntrB | -39 | 4.9 | TGCAACATAAGGGTGCA | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_3241 | glnB | -143 | 5.5 | TGCACAAATGTGGTGCA | |
| Sputcn32_0412 | glnA | -184 | 5.4 | CGCACCATCATAGTGCA | |
| Sputcn32_0815 | glnK2 | -96 | 5.7 | TGCACCTGTATGGTGCA | |
| Sputcn32_0815 | glnK2 | -109 | 4.6 | TGCACTGAAATAATGCA | |
| Sputcn32_0372 | ntrB | -52 | 6 | TGCACCAAATCGGTGCA | |
| Sputcn32_0372 | ntrB | -39 | 5 | TGCATCATGTTGATGCA | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_3358 | glnK2 | -109 | 5 | TGCACCGAAATAATGCA | |
| Sputw3181_3358 | glnK2 | -96 | 5.4 | TGCACCTATATGGAGCA | |
| Sputw3181_0266 | glnA | -184 | 5.6 | CGCACCATTATAGTGCA | |
| Sputw3181_0700 | glnB | -143 | 5.5 | TGCACAAATGTGGTGCA | |
| Sputw3181_0222 | ntrB | -52 | 6 | TGCACCAAATCGGTGCA | |
| Sputw3181_0222 | ntrB | -39 | 5 | TGCATCATGTTGATGCA | |
| Shewanella sp ANA-3 | |||||
| Shewana3_3532 | glnB | -143 | 5.2 | TGCACAAGTCTGGTGCA | |
| Shewana3_0300 | glnA | -247 | 4.6 | TGCACTAAAATGGTGTT | |
| Shewana3_0300 | glnA | -180 | 5.6 | CGCACCAATATAGTGCA | |
| Shewana3_0779 | glnK2 | -182 | 4.8 | TGCACCATCACAGCGCA | |
| Shewana3_0779 | glnK2 | -169 | 5 | CGCACCAAATCGGGGCG | |
| Shewana3_0259 | ntrB | -52 | 6 | TGCACCAAATCGGTGCA | |
| Shewana3_0259 | ntrB | -39 | 5.5 | TGCAACATAATGGTGCA | |
| Shewanella sp MR-4 | |||||
| Shewmr4_3362 | glnB | -143 | 5.2 | TGCACAAGTCTGGTGCA | |
| Shewmr4_3159 | glnK2 | -182 | 4.8 | TGCACCATCACAGCGCA | |
| Shewmr4_3159 | glnK2 | -169 | 5 | CGCACCAAATCGGGGCG | |
| Shewmr4_0305 | glnA | -180 | 5.8 | AGCACCAATATGGTGCA | |
| Shewmr4_0305 | glnA | -247 | 4.6 | TGCACTAAAATGGTGTT | |
| Shewmr4_0258 | ntrB | -39 | 5.5 | TGCAACATAATGGTGCA | |
| Shewmr4_0258 | ntrB | -52 | 6 | TGCACCAAATCGGTGCA | |
| Shewanella sp MR-7 | |||||
| Shewmr7_0591 | glnB | -143 | 5.2 | TGCACAAGTCTGGTGCA | |
| Shewmr7_3719 | glnA | -183 | 5.6 | AGCACCAACATGGTGCA | |
| Shewmr7_0808 | glnK2 | -169 | 5 | CGCACCAAATCGGGGCG | |
| Shewmr7_3763 | ntrB | -39 | 5.5 | TGCAACATAATGGTGCA | |
| Shewmr7_3763 | ntrB | -52 | 6 | TGCACCAAATCGGTGCA | |
| Shewanella baltica OS155 | |||||
| Sbal_0797 | glnB | -144 | 5.1 | TGCTCGATCATGGTGCA | |
| Sbal_0707 | glnK2 | -168 | 4.6 | CGCACCAAATCAGGGCG | |
| Sbal_0306 | glnA | -183 | 5.5 | AGCACCATAGTGGTGCA | |
| Sbal_0267 | ntrB | -52 | 5.5 | TGCACCAGATTGGCGCA | |
| Sbal_0267 | ntrB | -39 | 5.8 | CGCACCATAGTGGTGCA | |
| Shewanella denitrificans OS217 | |||||
| Sden_3454 | glnA | -228 | 5 | TGCACCATTATGGTGAT | |
| Sden_3454 | glnA | -251 | 5.7 | TGCACCATAACGGTGCG | |
| Sden_2905 | glnB | -152 | 5.7 | CGCACCTTATTGGTGCA | |
| Sden_2905 | glnB | -195 | 5.2 | TGCGCCACTTAGGTGCA | |
| Sden_3457 | ntrB | -79 | 6 | TGCACCATAGTGGTGCA | |
| Sden_3457 | ntrB | -52 | 5.8 | TGCACCACAATGGTGCG | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_0623 | glnB | -183 | 5.4 | TGCACCAAAACGATGCA | |
| Sfri_0325 | glnA | -197 | 5.4 | TGCACGAGGTTGGTGCA | |
| Sfri_0321 | ntrB | -37 | 5.7 | TGCATCATAATGGTGCA | |
| Sfri_0321 | ntrB | -50 | 6.1 | CGCACCAAATTGGTGCA | |
| Shewanella amazonensis SB2B | |||||
| Sama_0650 | glnB | -172 | 5.6 | TGCACCACCTTGGTGCG | |
| Sama_0650 | glnB | -142 | 4.7 | TGCACTTTTTTTGTGCG | |
| Sama_3416 | glnA | -192 | 5.5 | TGCCCCGATTTGGTGCA | |
| Sama_3416 | glnA | -214 | 5.1 | CGCACCAACATTGTGCG | |
| Sama_3416 | glnA | -244 | 4.9 | TGCACCTTTATCATGCA | |
| Sama_3426 | ntrB | -38 | 6.3 | TGCACCATATTGGTGCA | |
| Sama_3426 | ntrB | -51 | 6.3 | TGCACCATATTGGTGCA | |
| Shewanella loihica PV-4 | |||||
| Shew_0846 | glnB | -172 | 4.5 | TGCGCTATTTTTGTGCG | |
| Shew_0846 | glnB | -142 | 5.8 | CGCACCTAATTGGTGCA | |
| Shew_3554 | glnA | -178 | 5.9 | TGCACCTTTATGGTGCA | |
| Shew_3554 | glnA | -217 | 5.4 | CGCACCATATTGGTGAA | |
| Shew_3560 | ntrB | -52 | 6.3 | TGCACCAAATTGGTGCA | |
| Shew_3560 | ntrB | -39 | 6.2 | TGCACCATTATGGTGCA | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_0833 | glnB | -135 | 5.5 | TGCACCTTGCTGGTGCA | |
| Spea_3916 | glnA | -202 | 4.7 | TGCACCATATAGATCCA | |
| Spea_3916 | glnA | -180 | 5.8 | CGCACCAAAATGGTGCG | |
| Spea_3929 | ntrB | -79 | 6 | TGCACCATTTCGGTGCA | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_0888 | glnB | -137 | 4.7 | CGCACTCGAATGGTGCA | |
| Shal_0353 | glnA | -180 | 5.4 | CGCACCAAAATAGTGCG | |
| Shal_0342 | ntrB | -66 | 5.8 | TGCACCATAGTGGTGCG | |
| Shal_0342 | ntrB | -79 | 6 | TGCACCACTTTGGTGCA | |
| Shewanella piezotolerans WP3 | |||||
| swp_3956 | glnB | -136 | 5.4 | TGCACCCGATTGGTGCA | |
| swp_0268 | glnA | -218 | 4.7 | TGCACGATTATGAAGCA | |
| swp_0268 | glnA | -201 | 4.8 | CGCACCAAAATGATCCA | |
| swp_0268 | glnA | -179 | 4.9 | CGCACCATTAGAGTGCA | |
| swp_0250 | ntrB | -79 | 6.1 | CGCACCATTTTGGTGCA | |
| swp_0250 | ntrB | -66 | 6 | TGCACCATAGTGGTGCA | |
| swp_0250 | ntrB | -39 | 4.8 | CGTTCCAAAATGGTGCA | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_0933 | glnB | -151 | 5.1 | CGCACTTGTTTGGTGCA | |
| Ssed_0292 | glnA | -227 | 4.7 | CGCACCAGCTTGGTGAG | |
| Ssed_0292 | glnA | -188 | 5.5 | CGCACCAACTTAGTGCA | |
| Ssed_0283 | ntrB | -51 | 6.3 | TGCACCAATTTGGTGCA | |
| Ssed_0283 | ntrB | -38 | 6 | TGCACCATGATGGTGCA | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_1181 | glnK2 | -140 | 5.2 | TGCACCATGGTGATGCA | |
| Swoo_4643 | glnA | -216 | 4.7 | CGCACCAGGATGGTGAG | |
| Swoo_4643 | glnA | -199 | 5 | CGCACCATTATCGGGCA | |
| Swoo_4643 | glnA | -177 | 5.4 | CGCACCAAACTAGTGCA | |
| Swoo_0979 | glnB | -143 | 5.4 | CGCACCTTAATGGTGCG | |
| Swoo_0979 | glnB | -173 | 4.6 | TGCGCTAATTCCGTGCA | |
| Swoo_4650 | ntrB | -51 | 5.6 | TGCACTAGTTTGGTGCA | |
| Swoo_4650 | ntrB | -38 | 6.2 | TGCACCATAATGGTGCA | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |