Regulon of NtrC in Shewanella putrefaciens CN-32
| Regulator type: | Transcription factor |
| TF locus tag: | Sputcn32_0371 |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 4 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -184
Score: 5.4 Sequence: CGCACCATCATAGTGCA
Locus tag: Sputcn32_0412
Name: glnA Funciton: glutamine synthetase, type I |
|||
|
glnA
|
glutamine synthetase, type I
|
||
|
Position: -143
Score: 5.5 Sequence: TGCACAAATGTGGTGCA
Locus tag: Sputcn32_3241
Name: glnB Funciton: nitrogen regulatory protein P-II 1
Locus tag: Sputcn32_3240
Name: amtB Funciton: ammonium transporter |
|||
|
glnB
|
nitrogen regulatory protein P-II 1
|
||
|
amtB
|
ammonium transporter
|
||
|
Position: -52
Score: 6 Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 5 Sequence: TGCATCATGTTGATGCA
Locus tag: Sputcn32_0372
Name: ntrB Funciton: nitrogen regulation protein
Locus tag: Sputcn32_0371
Name: ntrC Funciton: nitrogen regulation protein NR(I) |
|||
|
ntrB
|
nitrogen regulation protein
|
||
|
ntrC
|
nitrogen regulation protein NR(I)
|
||
|
Position: -109
Score: 4.6 Sequence: TGCACTGAAATAATGCA
Position: -96
Score: 5.7 Sequence: TGCACCTGTATGGTGCA
Locus tag: Sputcn32_0815
Name: glnK2 Funciton: nitrogen regulatory protein P-II |
|||
|
glnK2
|
nitrogen regulatory protein P-II
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |