Regulon of NtrC in Shewanella oneidensis MR-1

Properties
Regulator type:	Transcription factor
TF locus tag:	SO_4472
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	6
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -246 Score: 4.6 Sequence: TGCACTAAAATGGGGGA Position: -179 Score: 5.4 Sequence: TGCACCAACACAGTGCA Locus tag: SO_4410 Name: glnA Funciton: glutamine synthetase, type I
	SO_4410	glnA	glutamine synthetase, type I
Position: -52 Score: 6 Sequence: TGCACCAAATCGGTGCA Position: -39 Score: 4.9 Sequence: TGCAACATAAGGGTGCA Locus tag: SO_4471 Name: ntrB Funciton: nitrogen regulation protein Locus tag: SO_4472 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	SO_4471	ntrB	nitrogen regulation protein
	SO_4472	ntrC	nitrogen regulation protein NR(I)
Position: -181 Score: 5.3 Sequence: TGCACCAAAATCGCGCA Position: -168 Score: 4.8 Sequence: CGCACCAAATCAGGGCA Locus tag: SO_3819 Name: glnK2 Funciton: nitrogen regulatory protein P-II
	SO_3819	glnK2	nitrogen regulatory protein P-II
Position: -142 Score: 5.5 Sequence: TGCACAATTCTGGTGCA Locus tag: SO_0761 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: SO_0760 Name: amtB Funciton: ammonium transporter
	SO_0761	glnB	nitrogen regulatory protein P-II 1
	SO_0760	amtB	ammonium transporter

Export
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