Regulon of NtrC in Shewanella loihica PV-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shew_3561 |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -217
Score: 5.4 Sequence: CGCACCATATTGGTGAA
Position: -178
Score: 5.9 Sequence: TGCACCTTTATGGTGCA
Locus tag: Shew_3554
Name: glnA Funciton: glutamine synthetase, type I |
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glnA
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glutamine synthetase, type I
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Position: -52
Score: 6.3 Sequence: TGCACCAAATTGGTGCA
Position: -39
Score: 6.2 Sequence: TGCACCATTATGGTGCA
Locus tag: Shew_3560
Name: ntrB Funciton: nitrogen regulation protein
Locus tag: Shew_3561
Name: ntrC Funciton: nitrogen regulation protein NR(I) |
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ntrB
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nitrogen regulation protein
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ntrC
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nitrogen regulation protein NR(I)
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Position: -172
Score: 4.5 Sequence: TGCGCTATTTTTGTGCG
Position: -142
Score: 5.8 Sequence: CGCACCTAATTGGTGCA
Locus tag: Shew_0846
Name: glnB Funciton: nitrogen regulatory protein P-II 1
Locus tag: Shew_0847
Name: amtB Funciton: ammonium transporter |
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glnB
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nitrogen regulatory protein P-II 1
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amtB
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ammonium transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |