Regulon of NtrC in Shewanella loihica PV-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shew_3561
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	5
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -217 Score: 5.4 Sequence: CGCACCATATTGGTGAA Position: -178 Score: 5.9 Sequence: TGCACCTTTATGGTGCA Locus tag: Shew_3554 Name: glnA Funciton: glutamine synthetase, type I
	Shew_3554	glnA	glutamine synthetase, type I
Position: -52 Score: 6.3 Sequence: TGCACCAAATTGGTGCA Position: -39 Score: 6.2 Sequence: TGCACCATTATGGTGCA Locus tag: Shew_3560 Name: ntrB Funciton: nitrogen regulation protein Locus tag: Shew_3561 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	Shew_3560	ntrB	nitrogen regulation protein
	Shew_3561	ntrC	nitrogen regulation protein NR(I)
Position: -172 Score: 4.5 Sequence: TGCGCTATTTTTGTGCG Position: -142 Score: 5.8 Sequence: CGCACCTAATTGGTGCA Locus tag: Shew_0846 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: Shew_0847 Name: amtB Funciton: ammonium transporter
	Shew_0846	glnB	nitrogen regulatory protein P-II 1
	Shew_0847	amtB	ammonium transporter

Export
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