Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_0249
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes 5
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 94 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -136
Score: 5.4
Sequence: TGCACCCGATTGGTGCA
Locus tag: swp_3956
Name: glnB
Funciton: nitrogen regulatory protein P-II 1
Locus tag: swp_3955
Name: amtB
Funciton: ammonium transporter
glnB
nitrogen regulatory protein P-II 1
amtB
ammonium transporter

Position: -79
Score: 6.1
Sequence: CGCACCATTTTGGTGCA
Position: -66
Score: 6
Sequence: TGCACCATAGTGGTGCA
Position: -39
Score: 4.8
Sequence: CGTTCCAAAATGGTGCA
Locus tag: swp_0250
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: swp_0249
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB
nitrogen regulation protein
ntrC
nitrogen regulation protein NR(I)

Position: -218
Score: 4.7
Sequence: TGCACGATTATGAAGCA
Position: -201
Score: 4.8
Sequence: CGCACCAAAATGATCCA
Position: -179
Score: 4.9
Sequence: CGCACCATTAGAGTGCA
Locus tag: swp_0268
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I
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