Regulon of NtrC in Shewanella sp MR-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewmr4_0257
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	7
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -143 Score: 5.2 Sequence: TGCACAAGTCTGGTGCA Locus tag: Shewmr4_3362 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: Shewmr4_3361 Name: amtB Funciton: ammonium transporter
	Shewmr4_3362	glnB	nitrogen regulatory protein P-II 1
	Shewmr4_3361	amtB	ammonium transporter
Position: -52 Score: 6 Sequence: TGCACCAAATCGGTGCA Position: -39 Score: 5.5 Sequence: TGCAACATAATGGTGCA Locus tag: Shewmr4_0258 Name: ntrB Funciton: nitrogen regulation protein Locus tag: Shewmr4_0257 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	Shewmr4_0258	ntrB	nitrogen regulation protein
	Shewmr4_0257	ntrC	nitrogen regulation protein NR(I)
Position: -182 Score: 4.8 Sequence: TGCACCATCACAGCGCA Position: -169 Score: 5 Sequence: CGCACCAAATCGGGGCG Locus tag: Shewmr4_3159 Name: glnK2 Funciton: nitrogen regulatory protein P-II Locus tag: Shewmr4_3160 Name: amtB2 Funciton: ammonium transporter
	Shewmr4_3159	glnK2	nitrogen regulatory protein P-II
	Shewmr4_3160	amtB2	ammonium transporter
Position: -247 Score: 4.6 Sequence: TGCACTAAAATGGTGTT Position: -180 Score: 5.8 Sequence: AGCACCAATATGGTGCA Locus tag: Shewmr4_0305 Name: glnA Funciton: glutamine synthetase, type I
	Shewmr4_0305	glnA	glutamine synthetase, type I

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD