Regulon of NtrC in Shewanella sp ANA-3
| Regulator type: | Transcription factor |
| TF locus tag: | Shewana3_0258 |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -247
Score: 4.6 Sequence: TGCACTAAAATGGTGTT
Position: -180
Score: 5.6 Sequence: CGCACCAATATAGTGCA
Locus tag: Shewana3_0300
Name: glnA Funciton: glutamine synthetase, type I |
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glnA
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glutamine synthetase, type I
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Position: -143
Score: 5.2 Sequence: TGCACAAGTCTGGTGCA
Locus tag: Shewana3_3532
Name: glnB Funciton: nitrogen regulatory protein P-II 1
Locus tag: Shewana3_3531
Name: amtB Funciton: ammonium transporter |
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glnB
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nitrogen regulatory protein P-II 1
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amtB
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ammonium transporter
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Position: -52
Score: 6 Sequence: TGCACCAAATCGGTGCA
Position: -39
Score: 5.5 Sequence: TGCAACATAATGGTGCA
Locus tag: Shewana3_0259
Name: ntrB Funciton: nitrogen regulation protein
Locus tag: Shewana3_0258
Name: ntrC Funciton: nitrogen regulation protein NR(I) |
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ntrB
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nitrogen regulation protein
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ntrC
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nitrogen regulation protein NR(I)
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Position: -182
Score: 4.8 Sequence: TGCACCATCACAGCGCA
Position: -169
Score: 5 Sequence: CGCACCAAATCGGGGCG
Locus tag: Shewana3_0779
Name: glnK2 Funciton: nitrogen regulatory protein P-II
Locus tag: Shewana3_0778
Name: amtB2 Funciton: ammonium transporter |
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glnK2
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nitrogen regulatory protein P-II
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amtB2
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ammonium transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |