Regulon of NtrC in Shewanella denitrificans OS217

Properties
Regulator type:	Transcription factor
TF locus tag:	Sden_3458
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	5
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -79 Score: 6 Sequence: TGCACCATAGTGGTGCA Position: -52 Score: 5.8 Sequence: TGCACCACAATGGTGCG Locus tag: Sden_3457 Name: ntrB Funciton: nitrogen regulation protein Locus tag: Sden_3458 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	Sden_3457	ntrB	nitrogen regulation protein
	Sden_3458	ntrC	nitrogen regulation protein NR(I)
Position: -251 Score: 5.7 Sequence: TGCACCATAACGGTGCG Position: -228 Score: 5 Sequence: TGCACCATTATGGTGAT Locus tag: Sden_3454 Name: glnA Funciton: glutamine synthetase, type I
	Sden_3454	glnA	glutamine synthetase, type I
Position: -195 Score: 5.2 Sequence: TGCGCCACTTAGGTGCA Position: -152 Score: 5.7 Sequence: CGCACCTTATTGGTGCA Locus tag: Sden_2905 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: Sden_2904 Name: amtB Funciton: ammonium transporter
	Sden_2905	glnB	nitrogen regulatory protein P-II 1
	Sden_2904	amtB	ammonium transporter

Export
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