Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_0320
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes 5
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 94 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -197
Score: 5.4
Sequence: TGCACGAGGTTGGTGCA
Locus tag: Sfri_0325
Name: glnA
Funciton: glutamine synthetase, type I
glnA
glutamine synthetase, type I

Position: -183
Score: 5.4
Sequence: TGCACCAAAACGATGCA
Locus tag: Sfri_0623
Name: glnB
Funciton: nitrogen regulatory protein P-II 1
Locus tag: Sfri_0624
Name: amtB
Funciton: ammonium transporter
glnB
nitrogen regulatory protein P-II 1
amtB
ammonium transporter

Position: -50
Score: 6.1
Sequence: CGCACCAAATTGGTGCA
Position: -37
Score: 5.7
Sequence: TGCATCATAATGGTGCA
Locus tag: Sfri_0321
Name: ntrB
Funciton: nitrogen regulation protein
Locus tag: Sfri_0320
Name: ntrC
Funciton: nitrogen regulation protein NR(I)
ntrB
nitrogen regulation protein
ntrC
nitrogen regulation protein NR(I)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
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