Regulon of NtrC in Shewanella amazonensis SB2B

Properties
Regulator type:	Transcription factor
TF locus tag:	Sama_3427
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	5
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -172 Score: 5.6 Sequence: TGCACCACCTTGGTGCG Position: -142 Score: 4.7 Sequence: TGCACTTTTTTTGTGCG Locus tag: Sama_0650 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: Sama_0651 Name: amtB Funciton: ammonium transporter
	Sama_0650	glnB	nitrogen regulatory protein P-II 1
	Sama_0651	amtB	ammonium transporter
Position: -51 Score: 6.3 Sequence: TGCACCATATTGGTGCA Position: -38 Score: 6.3 Sequence: TGCACCATATTGGTGCA Locus tag: Sama_3426 Name: ntrB Funciton: nitrogen regulation protein Locus tag: Sama_3427 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	Sama_3426	ntrB	nitrogen regulation protein
	Sama_3427	ntrC	nitrogen regulation protein NR(I)
Position: -244 Score: 4.9 Sequence: TGCACCTTTATCATGCA Position: -214 Score: 5.1 Sequence: CGCACCAACATTGTGCG Position: -192 Score: 5.5 Sequence: TGCCCCGATTTGGTGCA Locus tag: Sama_3416 Name: glnA Funciton: glutamine synthetase, type I
	Sama_3416	glnA	glutamine synthetase, type I

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD