Regulon of NtrC in Shewanella woodyi ATCC 51908

Properties
Regulator type:	Transcription factor
TF locus tag:	Swoo_4651
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Shewanellaceae
Statistics of regulated genes:
- Genes	7
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 94 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -51 Score: 5.6 Sequence: TGCACTAGTTTGGTGCA Position: -38 Score: 6.2 Sequence: TGCACCATAATGGTGCA Locus tag: Swoo_4650 Name: ntrB Funciton: nitrogen regulation protein Locus tag: Swoo_4651 Name: ntrC Funciton: nitrogen regulation protein NR(I)
	Swoo_4650	ntrB	nitrogen regulation protein
	Swoo_4651	ntrC	nitrogen regulation protein NR(I)
Position: -173 Score: 4.6 Sequence: TGCGCTAATTCCGTGCA Position: -143 Score: 5.4 Sequence: CGCACCTTAATGGTGCG Locus tag: Swoo_0979 Name: glnB Funciton: nitrogen regulatory protein P-II 1 Locus tag: Swoo_0980 Name: amtB Funciton: ammonium transporter
	Swoo_0979	glnB	nitrogen regulatory protein P-II 1
	Swoo_0980	amtB	ammonium transporter
Position: -140 Score: 5.2 Sequence: TGCACCATGGTGATGCA Locus tag: Swoo_1181 Name: glnK2 Funciton: nitrogen regulatory protein P-II Locus tag: Swoo_1182 Name: amtB2 Funciton: ammonium transporter
	Swoo_1181	glnK2	nitrogen regulatory protein P-II
	Swoo_1182	amtB2	ammonium transporter
Position: -216 Score: 4.7 Sequence: CGCACCAGGATGGTGAG Position: -199 Score: 5 Sequence: CGCACCATTATCGGGCA Position: -177 Score: 5.4 Sequence: CGCACCAAACTAGTGCA Locus tag: Swoo_4643 Name: glnA Funciton: glutamine synthetase, type I
	Swoo_4643	glnA	glutamine synthetase, type I

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD