Regulon of LiuR in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_1459
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	28
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -177 Score: 6 Sequence: GTTTACGTAAACGTCAAC Locus tag: Ssed_1126 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Ssed_1125 Name: gltD Funciton: glutamate synthase, small subunit
	Ssed_1126	gltB	glutamate synthase, large subunit
	Ssed_1125	gltD	glutamate synthase, small subunit
Position: -103 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Ssed_2329 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Ssed_2328 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Ssed_2327 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Ssed_2329	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Ssed_2328	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Ssed_2327	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -173 Score: 6.5 Sequence: CTTTACGTTAACGTAAAG Locus tag: Ssed_1877 Name: ldh Funciton: leucine dehydrogenase
	Ssed_1877	ldh	leucine dehydrogenase
Position: -523 Score: 5.1 Sequence: GTTAACGTAAACGTAACA Locus tag: Ssed_1414 Name: aceB Funciton: malate synthase A Locus tag: Ssed_1415 Name: null Funciton: isocitrate lyase
	Ssed_1414	aceB	malate synthase A
	Ssed_1415		isocitrate lyase
Position: -378 Score: 5.1 Sequence: GCTTACGTTTACGTAACT Locus tag: Ssed_1175 Name: thrA Funciton: aspartate kinase Locus tag: Ssed_1176 Name: thrB Funciton: homoserine kinase Locus tag: Ssed_1177 Name: thrC Funciton: threonine synthase
	Ssed_1175	thrA	aspartate kinase
	Ssed_1176	thrB	homoserine kinase
	Ssed_1177	thrC	threonine synthase
Position: -60 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Ssed_1459 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Ssed_1458 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Ssed_1457 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Ssed_1456 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Ssed_1455 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Ssed_1454 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Ssed_1453 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Ssed_1452 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Ssed_1459	liuR	branched chain amino acid metabolism regulator, MerR family
	Ssed_1458	liuA	isovaleryl-CoA dehydrogenase
	Ssed_1457	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Ssed_1456	liuC	methylglutaconyl-CoA hydratase
	Ssed_1455	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Ssed_1454	liuE	hydroxymethylglutaryl-CoA lyase
	Ssed_1453	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Ssed_1452	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -122 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Ssed_1473 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Ssed_1474 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Ssed_1475 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Ssed_1476 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Ssed_1477 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Ssed_1478 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Ssed_1479 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Ssed_1473	ivdA	3-ketoacyl-CoA thiolase
	Ssed_1474	ivdB	methylmalonate-semialdehyde dehydrogenase
	Ssed_1475	ivdC	branched-chain acyl-CoA dehydrogenase
	Ssed_1476	ivdD	enoyl-CoA hydratase
	Ssed_1477	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Ssed_1478	ivdF	3-hydroxyisobutyrate dehydrogenase
	Ssed_1479	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -96 Score: 5.7 Sequence: GTTGACGTTAACGTTAAC Locus tag: Ssed_1445 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Ssed_1446 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Ssed_1445	etfB	electron transfer flavoprotein, beta subunit
	Ssed_1446	etfA	electron transfer flavoprotein, alpha subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella sediminis HAW-EB3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --