Regulog LiuR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - LiuR
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 29 | 9 |
| Shewanella putrefaciens CN-32 | 29 | 9 |
| Shewanella sp W3-18-1 | 29 | 9 |
| Shewanella sp ANA-3 | 29 | 9 |
| Shewanella sp MR-4 | 29 | 9 |
| Shewanella sp MR-7 | 29 | 9 |
| Shewanella baltica OS155 | 28 | 8 |
| Shewanella denitrificans OS217 | 29 | 8 |
| Shewanella frigidimarina NCIMB 400 | 29 | 9 |
| Shewanella amazonensis SB2B | 28 | 8 |
| Shewanella loihica PV-4 | 25 | 7 |
| Shewanella pealeana ATCC 700345 | 27 | 8 |
| Shewanella halifaxensis HAW-EB4 | 28 | 8 |
| Shewanella piezotolerans WP3 | 26 | 8 |
| Shewanella sediminis HAW-EB3 | 28 | 8 |
| Shewanella woodyi ATCC 51908 | 27 | 8 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| gltB |
*
Shewanella oneidensis MR-1 Site: position = -188 score = 5.89198 sequence = GTTGACGTTAACGTCAAG Gene: SO_1325: glutamate synthase, large subunit |
*
Shewanella putrefaciens CN-32 Site: position = -187 score = 5.78541 sequence = GTTGACGTTAACGTAACG Gene: Sputcn32_1136: glutamate synthase, large subunit |
*
Shewanella sp W3-18-1 Site: position = -187 score = 5.86626 sequence = GTTGACGTTAACGTAATG Gene: Sputw3181_3028: glutamate synthase, large subunit |
*
Shewanella sp ANA-3 Site: position = -189 score = 5.67885 sequence = GTTAACGTTAACGTCAAG Gene: Shewana3_3050: glutamate synthase, large subunit |
*
Shewanella sp MR-4 Site: position = -188 score = 5.67885 sequence = GTTAACGTTAACGTCAAG Gene: Shewmr4_2872: glutamate synthase, large subunit |
*
Shewanella sp MR-7 Site: position = -188 score = 5.67885 sequence = GTTAACGTTAACGTCAAG Gene: Shewmr7_2954: glutamate synthase, large subunit |
*
Shewanella baltica OS155 Site: position = -189 score = 6.202 sequence = GTTGACGTTAACGTAAAG Gene: Sbal_1178: glutamate synthase, large subunit |
*
Shewanella denitrificans OS217 Site: position = -188 score = 6.15375 sequence = GCTTACGTTAACGTAAAG Gene: Sden_2790: glutamate synthase, large subunit |
*
Shewanella frigidimarina NCIMB 400 Site: position = -186 score = 6.202 sequence = GTTTACGTTAACGTCAAG Gene: Sfri_2951: glutamate synthase, large subunit |
*
Shewanella amazonensis SB2B Site: position = -191 score = 5.7651 sequence = GTTGACGTTAACGTAACC Gene: Sama_0857: glutamate synthase, large subunit |
*
Shewanella loihica PV-4 Site: position = -178 score = 5.84373 sequence = GTTGACGTTAACGTAAGG Gene: Shew_1032: glutamate synthase, large subunit |
*
Shewanella pealeana ATCC 700345 Site: position = -184 score = 5.80171 sequence = GTTTACGTTAAGGTAAGC Gene: Spea_1013: glutamate synthase, large subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -185 score = 6.15997 sequence = GTTTACGTTAAGGTAAAC Gene: Shal_1061: glutamate synthase, large subunit |
*
Shewanella piezotolerans WP3 Site: position = -185 score = 5.98768 sequence = GTTTACGTAAAGGTAAAC Gene: swp_3803: glutamate synthase, large subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -177 score = 6.00939 sequence = GTTTACGTAAACGTCAAC Gene: Ssed_1126: glutamate synthase, large subunit |
*
Shewanella woodyi ATCC 51908 Site: position = -179 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Swoo_1221: glutamate synthase, large subunit |
glutamate synthase, large subunit |
| gltD |
Gene: SO_1324: glutamate synthase, small subunit |
Gene: Sputcn32_1135: glutamate synthase, small subunit |
Gene: Sputw3181_3029: glutamate synthase, small subunit |
Gene: Shewana3_3051: glutamate synthase, small subunit |
Gene: Shewmr4_2873: glutamate synthase, small subunit |
Gene: Shewmr7_2955: glutamate synthase, small subunit |
Gene: Sbal_1177: glutamate synthase, small subunit |
Gene: Sden_2791: glutamate synthase, small subunit |
Gene: Sfri_2952: glutamate synthase, small subunit |
Gene: Sama_0856: glutamate synthase, small subunit |
Gene: Shew_1031: glutamate synthase, small subunit |
Gene: Spea_1012: glutamate synthase, small subunit |
Gene: Shal_1060: glutamate synthase, small subunit |
Gene: swp_3804: glutamate synthase, small subunit |
Gene: Ssed_1125: glutamate synthase, small subunit |
Gene: Swoo_1220: glutamate synthase, small subunit |
glutamate synthase, small subunit |
| CRON 2. | |||||||||||||||||
| thrA |
*
Shewanella oneidensis MR-1 Site: position = -372 score = 5.69397 sequence = CATTACGTTTACGTCAAC Gene: SO_3415: aspartate kinase |
*
Shewanella putrefaciens CN-32 Site: position = -373 score = 5.78541 sequence = CGTTACGTTAACGTCAAC Gene: Sputcn32_2735: aspartate kinase |
*
Shewanella sp W3-18-1 Site: position = -373 score = 5.78541 sequence = CGTTACGTTAACGTCAAC Gene: Sputw3181_1277: aspartate kinase |
*
Shewanella sp ANA-3 Site: position = -373 score = 5.38332 sequence = TATTACGTTTACGTCAAC Gene: Shewana3_1139: aspartate kinase |
*
Shewanella sp MR-4 Site: position = -373 score = 5.69397 sequence = CATTACGTTTACGTCAAC Gene: Shewmr4_1138: aspartate kinase |
*
Shewanella sp MR-7 Site: position = -373 score = 5.69397 sequence = CATTACGTTTACGTCAAC Gene: Shewmr7_1209: aspartate kinase |
*
Shewanella baltica OS155 Site: position = -373 score = 5.84595 sequence = GATTACGTTAACGTCAAC Gene: Sbal_1227: aspartate kinase |
*
Shewanella denitrificans OS217 Site: position = -466 score = 6.00177 sequence = CCTTACGTTTACGTAAAG Gene: Sden_2740: aspartate kinase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -436 score = 4.83087 sequence = GTTTACGTCAACGTTAGA Gene: Sfri_2906: aspartate kinase |
*
Shewanella amazonensis SB2B Site: position = -363 score = 5.06827 sequence = GGTTACCTTTACGTTAAG Gene: Sama_0905: aspartate kinase |
Gene: Shew_1079: aspartate kinase |
*
Shewanella pealeana ATCC 700345 Site: position = -366 score = 5.64896 sequence = GTTTACGTAAGCGTAAGC Gene: Spea_1066: aspartate kinase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -368 score = 5.17314 sequence = GTTTACGTAAGCGTAACT Gene: Shal_1114: aspartate kinase |
*
Shewanella piezotolerans WP3 Site: position = -367 score = 5.78477 sequence = GTTTACGTTAACGTAACA Gene: swp_3750: aspartate kinase |
*
Shewanella sediminis HAW-EB3 Site: position = -378 score = 5.12706 sequence = GCTTACGTTTACGTAACT Gene: Ssed_1175: aspartate kinase |
*
Shewanella woodyi ATCC 51908 Site: position = -377 score = 4.75319 sequence = TTTGCCGTAAACGTAAGG Gene: Swoo_1270: aspartate kinase |
aspartate kinase |
| thrB |
Gene: SO_3414: homoserine kinase |
Gene: Sputcn32_2734: homoserine kinase |
Gene: Sputw3181_1278: homoserine kinase |
Gene: Shewana3_1140: homoserine kinase |
Gene: Shewmr4_1139: homoserine kinase |
Gene: Shewmr7_1210: homoserine kinase |
Gene: Sbal_1228: homoserine kinase |
Gene: Sden_2739: homoserine kinase |
Gene: Sfri_2905: homoserine kinase |
Gene: Sama_0906: homoserine kinase |
Gene: Shew_1080: homoserine kinase |
Gene: Spea_1067: homoserine kinase |
Gene: Shal_1115: homoserine kinase |
Gene: swp_3749: homoserine kinase |
Gene: Ssed_1176: homoserine kinase |
Gene: Swoo_1271: homoserine kinase |
homoserine kinase |
| thrC |
Gene: SO_3413: threonine synthase |
Gene: Sputcn32_2733: threonine synthase |
Gene: Sputw3181_1279: threonine synthase |
Gene: Shewana3_1141: threonine synthase |
Gene: Shewmr4_1140: threonine synthase |
Gene: Shewmr7_1211: threonine synthase |
Gene: Sbal_1229: threonine synthase |
Gene: Sden_2738: threonine synthase |
Gene: Sfri_2904: threonine synthase |
Gene: Sama_0907: threonine synthase |
Gene: Shew_1081: threonine synthase |
Gene: Spea_1068: threonine synthase |
Gene: Shal_1116: threonine synthase |
Gene: swp_3748: threonine synthase |
Gene: Ssed_1177: threonine synthase |
Gene: Swoo_1272: threonine synthase |
threonine synthase |
| CRON 3. | |||||||||||||||||
| liuR |
*
Shewanella oneidensis MR-1 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: SO_1898: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella putrefaciens CN-32 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Sputcn32_1720: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella sp W3-18-1 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Sputw3181_2305: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella sp ANA-3 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Shewana3_1673: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella sp MR-4 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Shewmr4_2321: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella sp MR-7 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Shewmr7_2393: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella baltica OS155 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Sbal_2827: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella denitrificans OS217 Site: position = -58 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Sden_2244: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -59 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Sfri_2726: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella amazonensis SB2B Site: position = -65 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Sama_1363: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella loihica PV-4 Site: position = -63 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Shew_2569: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella pealeana ATCC 700345 Site: position = -63 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Spea_2796: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -62 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Shal_2901: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella piezotolerans WP3 Site: position = -28 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: swp_3441: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella sediminis HAW-EB3 Site: position = -60 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Ssed_1459: branched chain amino acid metabolism regulator, MerR family |
*
Shewanella woodyi ATCC 51908 Site: position = -61 score = 6.00799 sequence = CTTTACCTTTACGTAAAC Gene: Swoo_3222: branched chain amino acid metabolism regulator, MerR family |
branched chain amino acid metabolism regulator, MerR family |
| liuA |
Gene: SO_1897: isovaleryl-CoA dehydrogenase |
Gene: Sputcn32_1719: isovaleryl-CoA dehydrogenase |
Gene: Sputw3181_2306: isovaleryl-CoA dehydrogenase |
Gene: Shewana3_1672: isovaleryl-CoA dehydrogenase |
Gene: Shewmr4_2322: isovaleryl-CoA dehydrogenase |
Gene: Shewmr7_2394: isovaleryl-CoA dehydrogenase |
Gene: Sbal_2828: isovaleryl-CoA dehydrogenase |
Gene: Sden_2245: isovaleryl-CoA dehydrogenase |
Gene: Sfri_2727: isovaleryl-CoA dehydrogenase |
Gene: Sama_1362: isovaleryl-CoA dehydrogenase |
Gene: Shew_2570: isovaleryl-CoA dehydrogenase |
Gene: Spea_2797: isovaleryl-CoA dehydrogenase |
Gene: Shal_2902: isovaleryl-CoA dehydrogenase |
Gene: swp_3442: isovaleryl-CoA dehydrogenase |
Gene: Ssed_1458: isovaleryl-CoA dehydrogenase |
Gene: Swoo_3223: isovaleryl-CoA dehydrogenase |
isovaleryl-CoA dehydrogenase |
| liuB |
Gene: SO_1896: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Sputcn32_1718: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Sputw3181_2307: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Shewana3_1671: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Shewmr4_2323: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Shewmr7_2395: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Sbal_2829: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Sden_2246: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Sfri_2728: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Sama_1361: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Shew_2571: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Spea_2798: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Shal_2903: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: swp_3443: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Ssed_1457: 3-methylcrotonyl CoA carboxylase, beta subunit |
Gene: Swoo_3224: 3-methylcrotonyl CoA carboxylase, beta subunit |
3-methylcrotonyl CoA carboxylase, beta subunit |
| liuC |
Gene: SO_1895: methylglutaconyl-CoA hydratase |
Gene: Sputcn32_1717: methylglutaconyl-CoA hydratase |
Gene: Sputw3181_2308: methylglutaconyl-CoA hydratase |
Gene: Shewana3_1670: methylglutaconyl-CoA hydratase |
Gene: Shewmr4_2324: methylglutaconyl-CoA hydratase |
Gene: Shewmr7_2396: methylglutaconyl-CoA hydratase |
Gene: Sbal_2830: methylglutaconyl-CoA hydratase |
Gene: Sden_2247: methylglutaconyl-CoA hydratase |
Gene: Sfri_2729: methylglutaconyl-CoA hydratase |
Gene: Sama_1360: methylglutaconyl-CoA hydratase |
Gene: Shew_2572: methylglutaconyl-CoA hydratase |
Gene: Spea_2799: methylglutaconyl-CoA hydratase |
Gene: Shal_2904: methylglutaconyl-CoA hydratase |
Gene: swp_3444: methylglutaconyl-CoA hydratase |
Gene: Ssed_1456: methylglutaconyl-CoA hydratase |
Gene: Swoo_3225: methylglutaconyl-CoA hydratase |
methylglutaconyl-CoA hydratase |
| liuD |
Gene: SO_1894: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Sputcn32_1716: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Sputw3181_2309: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Shewana3_1669: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Shewmr4_2325: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Shewmr7_2397: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Sbal_2831: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
2
Shewanella denitrificans OS217 Gene: Sden_2248: methylcrotonyl-CoA carboxylase, biotin-containing subunit Gene: Sden_2249: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Sfri_2730: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Sama_1359: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Shew_2573: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Spea_2800: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
2
Shewanella halifaxensis HAW-EB4 Gene: Shal_2905: methylcrotonyl-CoA carboxylase, biotin-containing subunit Gene: Shal_2906: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: swp_3445: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Ssed_1455: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
Gene: Swoo_3226: methylcrotonyl-CoA carboxylase, biotin-containing subunit |
methylcrotonyl-CoA carboxylase, biotin-containing subunit |
| liuE |
Gene: SO_1893: hydroxymethylglutaryl-CoA lyase |
Gene: Sputcn32_1715: hydroxymethylglutaryl-CoA lyase |
Gene: Sputw3181_2310: hydroxymethylglutaryl-CoA lyase |
Gene: Shewana3_1668: hydroxymethylglutaryl-CoA lyase |
Gene: Shewmr4_2326: hydroxymethylglutaryl-CoA lyase |
Gene: Shewmr7_2398: hydroxymethylglutaryl-CoA lyase |
Gene: Sbal_2832: hydroxymethylglutaryl-CoA lyase |
Gene: Sden_2250: hydroxymethylglutaryl-CoA lyase |
Gene: Sfri_2731: hydroxymethylglutaryl-CoA lyase |
Gene: Sama_1358: hydroxymethylglutaryl-CoA lyase |
Gene: Shew_2574: hydroxymethylglutaryl-CoA lyase |
Gene: Spea_2802: hydroxymethylglutaryl-CoA lyase |
Gene: Shal_2907: hydroxymethylglutaryl-CoA lyase |
Gene: swp_3448: hydroxymethylglutaryl-CoA lyase |
Gene: Ssed_1454: hydroxymethylglutaryl-CoA lyase |
Gene: Swoo_3227: hydroxymethylglutaryl-CoA lyase |
hydroxymethylglutaryl-CoA lyase |
| liuF |
Gene: SO_1892: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Sputcn32_1714: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Sputw3181_2311: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Shewana3_1667: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Shewmr4_2327: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Shewmr7_2399: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Sbal_2833: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Sden_2251: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Sfri_2732: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Sama_1357: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Shew_2575: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Spea_2803: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Shal_2908: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: swp_3449: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Ssed_1453: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
Gene: Swoo_3228: acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
acetyl-CoA:acetoacetate-CoA transferase, beta subunit |
| liuG |
Gene: SO_1891: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Sputcn32_1713: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Sputw3181_2312: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Shewana3_1666: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Shewmr4_2328: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Shewmr7_2400: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Sbal_2834: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Sden_2252: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Sfri_2733: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Sama_1356: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Shew_2576: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Spea_2804: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Shal_2909: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: swp_3450: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Ssed_1452: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
Gene: Swoo_3229: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
| swp_3446 |
|
|
|
|
|
|
|
|
|
|
|
|
|
Gene: swp_3446: hypothetical protein swp_3446 |
|
|
hypothetical protein swp_3446 |
| CRON 4. | |||||||||||||||||
| ivdA |
*
Shewanella oneidensis MR-1 Site: position = -96 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: SO_1677: 3-ketoacyl-CoA thiolase |
*
Shewanella putrefaciens CN-32 Site: position = -104 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Sputcn32_1397: 3-ketoacyl-CoA thiolase |
*
Shewanella sp W3-18-1 Site: position = -104 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Sputw3181_2704: 3-ketoacyl-CoA thiolase |
*
Shewanella sp ANA-3 Site: position = -96 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Shewana3_2771: 3-ketoacyl-CoA thiolase |
*
Shewanella sp MR-4 Site: position = -96 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Shewmr4_2597: 3-ketoacyl-CoA thiolase |
*
Shewanella sp MR-7 Site: position = -96 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Shewmr7_2664: 3-ketoacyl-CoA thiolase |
*
Shewanella baltica OS155 Site: position = -100 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Sbal_1495: 3-ketoacyl-CoA thiolase |
*
Shewanella denitrificans OS217 Site: position = -97 score = 6.19983 sequence = CTTTACGTTAGCGTAAAC Gene: Sden_1943: 3-ketoacyl-CoA thiolase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -78 score = 5.5543 sequence = CTTTACGTTCGCGTCAAC Gene: Sfri_1338: 3-ketoacyl-CoA thiolase |
*
Shewanella amazonensis SB2B Site: position = -110 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Sama_1375: 3-ketoacyl-CoA thiolase |
*
Shewanella loihica PV-4 Site: position = -105 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Shew_1667: 3-ketoacyl-CoA thiolase |
*
Shewanella pealeana ATCC 700345 Site: position = -168 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Spea_2783: 3-ketoacyl-CoA thiolase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -168 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Shal_2878: 3-ketoacyl-CoA thiolase |
*
Shewanella piezotolerans WP3 Site: position = -206 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: swp_3387: 3-ketoacyl-CoA thiolase |
*
Shewanella sediminis HAW-EB3 Site: position = -122 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Ssed_1473: 3-ketoacyl-CoA thiolase |
*
Shewanella woodyi ATCC 51908 Site: position = -110 score = 5.86431 sequence = CTTTACGTTCGCGTAAAC Gene: Swoo_3202: 3-ketoacyl-CoA thiolase |
3-ketoacyl-CoA thiolase |
| ivdB |
Gene: SO_1678: methylmalonate-semialdehyde dehydrogenase |
Gene: Sputcn32_1398: methylmalonate-semialdehyde dehydrogenase |
Gene: Sputw3181_2703: methylmalonate-semialdehyde dehydrogenase |
Gene: Shewana3_2770: methylmalonate-semialdehyde dehydrogenase |
Gene: Shewmr4_2596: methylmalonate-semialdehyde dehydrogenase |
Gene: Shewmr7_2663: methylmalonate-semialdehyde dehydrogenase |
Gene: Sbal_1496: methylmalonate-semialdehyde dehydrogenase |
Gene: Sden_1942: methylmalonate-semialdehyde dehydrogenase |
Gene: Sfri_1339: methylmalonate-semialdehyde dehydrogenase |
Gene: Sama_1376: methylmalonate-semialdehyde dehydrogenase |
Gene: Shew_1668: methylmalonate-semialdehyde dehydrogenase |
Gene: Spea_2782: methylmalonate-semialdehyde dehydrogenase |
Gene: Shal_2877: methylmalonate-semialdehyde dehydrogenase |
Gene: swp_3386: methylmalonate-semialdehyde dehydrogenase |
Gene: Ssed_1474: methylmalonate-semialdehyde dehydrogenase |
Gene: Swoo_3201: methylmalonate-semialdehyde dehydrogenase |
methylmalonate-semialdehyde dehydrogenase |
| ivdC |
Gene: SO_1679: branched-chain acyl-CoA dehydrogenase |
Gene: Sputcn32_1399: branched-chain acyl-CoA dehydrogenase |
Gene: Sputw3181_2702: branched-chain acyl-CoA dehydrogenase |
Gene: Shewana3_2769: branched-chain acyl-CoA dehydrogenase |
Gene: Shewmr4_2595: branched-chain acyl-CoA dehydrogenase |
Gene: Shewmr7_2662: branched-chain acyl-CoA dehydrogenase |
Gene: Sbal_1497: branched-chain acyl-CoA dehydrogenase |
Gene: Sden_1941: branched-chain acyl-CoA dehydrogenase |
Gene: Sfri_1340: branched-chain acyl-CoA dehydrogenase |
Gene: Sama_1377: branched-chain acyl-CoA dehydrogenase |
Gene: Shew_1669: branched-chain acyl-CoA dehydrogenase |
Gene: Spea_2781: branched-chain acyl-CoA dehydrogenase |
Gene: Shal_2876: branched-chain acyl-CoA dehydrogenase |
Gene: swp_3385: branched-chain acyl-CoA dehydrogenase |
Gene: Ssed_1475: branched-chain acyl-CoA dehydrogenase |
Gene: Swoo_3200: branched-chain acyl-CoA dehydrogenase |
branched-chain acyl-CoA dehydrogenase |
| ivdD |
Gene: SO_1680: enoyl-CoA hydratase |
Gene: Sputcn32_1400: enoyl-CoA hydratase |
Gene: Sputw3181_2701: enoyl-CoA hydratase |
Gene: Shewana3_2768: enoyl-CoA hydratase |
Gene: Shewmr4_2594: enoyl-CoA hydratase |
Gene: Shewmr7_2661: enoyl-CoA hydratase |
Gene: Sbal_1498: enoyl-CoA hydratase |
Gene: Sden_1940: enoyl-CoA hydratase |
Gene: Sfri_1341: enoyl-CoA hydratase |
Gene: Sama_1378: enoyl-CoA hydratase |
Gene: Shew_1670: enoyl-CoA hydratase |
Gene: Spea_2780: enoyl-CoA hydratase |
Gene: Shal_2875: enoyl-CoA hydratase |
Gene: swp_3384: enoyl-CoA hydratase |
Gene: Ssed_1476: enoyl-CoA hydratase |
Gene: Swoo_3199: enoyl-CoA hydratase |
enoyl-CoA hydratase |
| ivdE |
Gene: SO_1681: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Sputcn32_1401: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Sputw3181_2700: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Shewana3_2767: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Shewmr4_2593: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Shewmr7_2660: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Sbal_1499: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Sden_1939: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Sfri_1342: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Sama_1379: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Shew_1671: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Spea_2779: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Shal_2874: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: swp_3383: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Ssed_1477: 3-hydroxyisobutyryl-CoA hydrolase |
Gene: Swoo_3198: 3-hydroxyisobutyryl-CoA hydrolase |
3-hydroxyisobutyryl-CoA hydrolase |
| ivdF |
Gene: SO_1682: 3-hydroxyisobutyrate dehydrogenase |
Gene: Sputcn32_1402: 3-hydroxyisobutyrate dehydrogenase |
Gene: Sputw3181_2699: 3-hydroxyisobutyrate dehydrogenase |
Gene: Shewana3_2766: 3-hydroxyisobutyrate dehydrogenase |
Gene: Shewmr4_2592: 3-hydroxyisobutyrate dehydrogenase |
Gene: Shewmr7_2659: 3-hydroxyisobutyrate dehydrogenase |
Gene: Sbal_1500: 3-hydroxyisobutyrate dehydrogenase |
Gene: Sden_1938: 3-hydroxyisobutyrate dehydrogenase |
Gene: Sfri_1343: 3-hydroxyisobutyrate dehydrogenase |
Gene: Sama_1380: 3-hydroxyisobutyrate dehydrogenase |
Gene: Shew_1672: 3-hydroxyisobutyrate dehydrogenase |
Gene: Spea_2778: 3-hydroxyisobutyrate dehydrogenase |
Gene: Shal_2873: 3-hydroxyisobutyrate dehydrogenase |
Gene: swp_3382: 3-hydroxyisobutyrate dehydrogenase |
Gene: Ssed_1478: 3-hydroxyisobutyrate dehydrogenase |
Gene: Swoo_3197: 3-hydroxyisobutyrate dehydrogenase |
3-hydroxyisobutyrate dehydrogenase |
| ivdG |
Gene: SO_1683: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Sputcn32_1403: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Sputw3181_2698: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Shewana3_2765: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Shewmr4_2591: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Shewmr7_2658: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Sbal_1501: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Sden_1937: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Sfri_1344: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Sama_1381: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Shew_1673: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Spea_2777: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Shal_2872: 3-hydroxyacyl-CoA dehydrogenase |
Gene: swp_3381: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Ssed_1479: 3-hydroxyacyl-CoA dehydrogenase |
Gene: Swoo_3196: 3-hydroxyacyl-CoA dehydrogenase |
3-hydroxyacyl-CoA dehydrogenase |
| CRON 5. | |||||||||||||||||
| tyrR |
*
Shewanella oneidensis MR-1 Site: position = -122 score = 6.02754 sequence = CTTTACGTTTGCGTAAAC Gene: SO_1669: aromatic amino acid biosynthesis/transport transciptional regulator |
*
Shewanella putrefaciens CN-32 Site: position = -121 score = 6.02754 sequence = GTTTACGTTTGCGTAAAG Gene: Sputcn32_1388: aromatic amino acid biosynthesis/transport transciptional regulator |
*
Shewanella sp W3-18-1 Site: position = -121 score = 6.02754 sequence = GTTTACGTTTGCGTAAAG Gene: Sputw3181_2713: aromatic amino acid biosynthesis/transport transciptional regulator |
*
Shewanella sp ANA-3 Site: position = -137 score = 5.71689 sequence = TTTTACGTTTGCGTAAAC Gene: Shewana3_2779: aromatic amino acid biosynthesis/transport transciptional regulator |
*
Shewanella sp MR-4 Site: position = -137 score = 5.71689 sequence = TTTTACGTTTGCGTAAAC Gene: Shewmr4_2605: aromatic amino acid biosynthesis/transport transciptional regulator |
*
Shewanella sp MR-7 Site: position = -137 score = 5.71689 sequence = TTTTACGTTTGCGTAAAC Gene: Shewmr7_2672: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Sbal_1486: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Sden_2593: aromatic amino acid biosynthesis/transport transciptional regulator |
*
Shewanella frigidimarina NCIMB 400 Site: position = -140 score = 5.07785 sequence = TGTTACGTTAACGTAACA Gene: Sfri_1330: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Sama_2220: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Shew_1437: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Spea_1450: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Shal_1533: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: swp_1652: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Ssed_2928: aromatic amino acid biosynthesis/transport transciptional regulator |
Gene: Swoo_1717: aromatic amino acid biosynthesis/transport transciptional regulator |
aromatic amino acid biosynthesis/transport transciptional regulator |
| CRON 6. | |||||||||||||||||
| etfB |
*
Shewanella oneidensis MR-1 Site: position = -98 score = 5.24104 sequence = ATTGACGTTAACGTTAAC Gene: SO_3145: electron transfer flavoprotein, beta subunit |
*
Shewanella putrefaciens CN-32 Site: position = -98 score = 5.45417 sequence = ATTGACGTTAACGTCAAC Gene: Sputcn32_2511: electron transfer flavoprotein, beta subunit |
*
Shewanella sp W3-18-1 Site: position = -98 score = 5.24104 sequence = ATTGACGTTAACGTTAAC Gene: Sputw3181_1497: electron transfer flavoprotein, beta subunit |
*
Shewanella sp ANA-3 Site: position = -98 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Shewana3_1405: electron transfer flavoprotein, beta subunit |
*
Shewanella sp MR-4 Site: position = -98 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Shewmr4_1352: electron transfer flavoprotein, beta subunit |
*
Shewanella sp MR-7 Site: position = -98 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Shewmr7_1417: electron transfer flavoprotein, beta subunit |
*
Shewanella baltica OS155 Site: position = -98 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Sbal_2847: electron transfer flavoprotein, beta subunit |
*
Shewanella denitrificans OS217 Site: position = -97 score = 5.87167 sequence = GTTGACGTTAACGTCAAC Gene: Sden_2539: electron transfer flavoprotein, beta subunit |
*
Shewanella frigidimarina NCIMB 400 Site: position = -99 score = 5.24104 sequence = ATTGACGTTAACGTTAAC Gene: Sfri_2748: electron transfer flavoprotein, beta subunit |
*
Shewanella amazonensis SB2B Site: position = -106 score = 5.48625 sequence = GTTGACGTTTACGTTAAC Gene: Sama_1169: electron transfer flavoprotein, beta subunit |
*
Shewanella loihica PV-4 Site: position = -100 score = 5.87167 sequence = GTTGACGTTAACGTCAAC Gene: Shew_2584: electron transfer flavoprotein, beta subunit |
*
Shewanella pealeana ATCC 700345 Site: position = -121 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Spea_2855: electron transfer flavoprotein, beta subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -120 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Shal_2945: electron transfer flavoprotein, beta subunit |
*
Shewanella piezotolerans WP3 Site: position = -116 score = 5.87167 sequence = GTTGACGTTAACGTCAAC Gene: swp_3472: electron transfer flavoprotein, beta subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -96 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Ssed_1445: electron transfer flavoprotein, beta subunit |
*
Shewanella woodyi ATCC 51908 Site: position = -99 score = 5.65854 sequence = GTTGACGTTAACGTTAAC Gene: Swoo_3236: electron transfer flavoprotein, beta subunit |
electron transfer flavoprotein, beta subunit |
| etfA |
Gene: SO_3144: electron transfer flavoprotein, alpha subunit |
Gene: Sputcn32_2510: electron transfer flavoprotein, alpha subunit |
Gene: Sputw3181_1498: electron transfer flavoprotein, alpha subunit |
Gene: Shewana3_1406: electron transfer flavoprotein, alpha subunit |
Gene: Shewmr4_1353: electron transfer flavoprotein, alpha subunit |
Gene: Shewmr7_1418: electron transfer flavoprotein, alpha subunit |
Gene: Sbal_2846: electron transfer flavoprotein, alpha subunit |
Gene: Sden_2538: electron transfer flavoprotein, alpha subunit |
Gene: Sfri_2747: electron transfer flavoprotein, alpha subunit |
Gene: Sama_1170: electron transfer flavoprotein, alpha subunit |
Gene: Shew_2583: electron transfer flavoprotein, alpha subunit |
Gene: Spea_2854: electron transfer flavoprotein, alpha subunit |
Gene: Shal_2944: electron transfer flavoprotein, alpha subunit |
Gene: swp_3471: electron transfer flavoprotein, alpha subunit |
Gene: Ssed_1446: electron transfer flavoprotein, alpha subunit |
Gene: Swoo_3235: electron transfer flavoprotein, alpha subunit |
electron transfer flavoprotein, alpha subunit |
| CRON 7. | |||||||||||||||||
| bkdA1 |
*
Shewanella oneidensis MR-1 Site: position = -90 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: SO_2339: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella putrefaciens CN-32 Site: position = -90 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Sputcn32_1885: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella sp W3-18-1 Site: position = -90 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Sputw3181_2123: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella sp ANA-3 Site: position = -90 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Shewana3_2131: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella sp MR-4 Site: position = -90 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Shewmr4_2028: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella sp MR-7 Site: position = -90 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Shewmr7_1947: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella baltica OS155 Site: position = -90 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Sbal_2222: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella denitrificans OS217 Site: position = -83 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Sden_1786: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella frigidimarina NCIMB 400 Site: position = -86 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Sfri_1935: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella amazonensis SB2B Site: position = -81 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Sama_1709: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella loihica PV-4 Site: position = -105 score = 5.65761 sequence = GTTTACGTTAACGTAACT Gene: Shew_1925: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella pealeana ATCC 700345 Site: position = -91 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Spea_2246: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -92 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Shal_2234: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella piezotolerans WP3 Site: position = -92 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: swp_2606: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -103 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Ssed_2329: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
*
Shewanella woodyi ATCC 51908 Site: position = -101 score = 6.17627 sequence = GTTTACGTTAACGTAATG Gene: Swoo_2278: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit |
| bkdA2 |
Gene: SO_2340: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Sputcn32_1886: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Sputw3181_2122: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Shewana3_2130: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Shewmr4_2027: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Shewmr7_1948: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Sbal_2221: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Sden_1787: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Sfri_1936: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Sama_1710: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Shew_1926: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Spea_2245: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Shal_2233: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: swp_2605: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Ssed_2328: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
Gene: Swoo_2279: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni |
| bkdB |
Gene: SO_2341: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Sputcn32_1887: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Sputw3181_2121: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Shewana3_2129: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Shewmr4_2026: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Shewmr7_1949: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Sbal_2220: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Sden_1788: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Sfri_1937: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Sama_1711: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Shew_1927: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Spea_2244: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Shal_2232: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: swp_2604: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Ssed_2327: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
Gene: Swoo_2280: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
| CRON 8. | |||||||||||||||||
| ldh |
*
Shewanella oneidensis MR-1 Site: position = -171 score = 6.00177 sequence = CCTTACGTTTACGTAAAG Gene: SO_2638: leucine dehydrogenase |
*
Shewanella putrefaciens CN-32 Site: position = -172 score = 5.98146 sequence = GCTTACGTTTACGTAAAG Gene: Sputcn32_2238: leucine dehydrogenase |
*
Shewanella sp W3-18-1 Site: position = -172 score = 5.98146 sequence = GCTTACGTTTACGTAAAG Gene: Sputw3181_1771: leucine dehydrogenase |
*
Shewanella sp ANA-3 Site: position = -171 score = 6.00177 sequence = CCTTACGTTTACGTAAAG Gene: Shewana3_1742: leucine dehydrogenase |
*
Shewanella sp MR-4 Site: position = -171 score = 6.00177 sequence = CCTTACGTTTACGTAAAG Gene: Shewmr4_1598: leucine dehydrogenase |
*
Shewanella sp MR-7 Site: position = -171 score = 6.00177 sequence = CCTTACGTTTACGTAAAG Gene: Shewmr7_1673: leucine dehydrogenase |
*
Shewanella baltica OS155 Site: position = -151 score = 5.98146 sequence = GCTTACGTTTACGTAAAG Gene: Sbal_2483: leucine dehydrogenase |
*
Shewanella denitrificans OS217 Site: position = -157 score = 6.36003 sequence = CTTTACGTTTACGTAAAG Gene: Sden_1823: leucine dehydrogenase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -195 score = 6.36003 sequence = CTTTACGTTTACGTAAAG Gene: Sfri_2265: leucine dehydrogenase |
*
Shewanella amazonensis SB2B Site: position = -164 score = 6.04324 sequence = CTTTACGTTGACGTAAAG Gene: Sama_2067: leucine dehydrogenase |
*
Shewanella loihica PV-4 Site: position = -174 score = 6.53232 sequence = CTTTACGTTAACGTAAAG Gene: Shew_1555: leucine dehydrogenase |
*
Shewanella pealeana ATCC 700345 Site: position = -174 score = 6.53232 sequence = CTTTACGTTAACGTAAAG Gene: Spea_2543: leucine dehydrogenase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -174 score = 6.53232 sequence = CTTTACGTTAACGTAAAG Gene: Shal_1711: leucine dehydrogenase |
*
Shewanella piezotolerans WP3 Site: position = -175 score = 6.53232 sequence = CTTTACGTTAACGTAAAG Gene: swp_1857: leucine dehydrogenase |
*
Shewanella sediminis HAW-EB3 Site: position = -173 score = 6.53232 sequence = CTTTACGTTAACGTAAAG Gene: Ssed_1877: leucine dehydrogenase |
*
Shewanella woodyi ATCC 51908 Site: position = -174 score = 5.7845 sequence = ATTGACGTTAACGTAAAG Gene: Swoo_2710: leucine dehydrogenase |
leucine dehydrogenase |
| CRON 9. | |||||||||||||||||
| aceB |
*
Shewanella oneidensis MR-1 Site: position = -524 score = 6.02907 sequence = GTTTACGTAAACGTAAAA Gene: SO_1483: malate synthase A |
*
Shewanella putrefaciens CN-32 Site: position = -456 score = 6.02907 sequence = GTTTACGTAAACGTAAAA Gene: Sputcn32_1238: malate synthase A |
*
Shewanella sp W3-18-1 Site: position = -455 score = 6.02907 sequence = GTTTACGTAAACGTAAAA Gene: Sputw3181_2866: malate synthase A |
*
Shewanella sp ANA-3 Site: position = -524 score = 5.61248 sequence = GTTTACGTAAACGTAACA Gene: Shewana3_2943: malate synthase A |
*
Shewanella sp MR-4 Site: position = -524 score = 5.69333 sequence = GTTTACGTAAACGTAATA Gene: Shewmr4_2767: malate synthase A |
*
Shewanella sp MR-7 Site: position = -524 score = 5.69333 sequence = GTTTACGTAAACGTAATA Gene: Shewmr7_2845: malate synthase A |
*
Shewanella baltica OS155 Site: position = -532 score = 5.71905 sequence = GTTTACGTAAACGTCAAA Gene: Sbal_1316: malate synthase A |
*
Shewanella denitrificans OS217 Site: position = -487 score = 5.67081 sequence = GTTTACGTAAACGTAAGA Gene: Sden_1245: malate synthase A |
*
Shewanella frigidimarina NCIMB 400 Site: position = -615 score = 5.6328 sequence = TGTTACGTTTACGTAAAG Gene: Sfri_1101: malate synthase A |
*
Shewanella amazonensis SB2B Site: position = -516 score = 5.33909 sequence = GTTTACGTAAAGGTAAGA Gene: Sama_2381: malate synthase A |
*
Shewanella loihica PV-4 Site: position = -544 score = 5.71905 sequence = GTTTACGTAAACGTCAAA Gene: Shew_1275: malate synthase A |
*
Shewanella pealeana ATCC 700345 Site: position = -573 score = 5.00088 sequence = TGTTACGTTTCCGTAAAC Gene: Spea_1290: malate synthase A |
*
Shewanella halifaxensis HAW-EB4 Site: position = -609 score = 4.93517 sequence = GTTAACGTAAACGTTAGG Gene: Shal_1352: malate synthase A |
*
Shewanella piezotolerans WP3 Site: position = -564 score = 5.55276 sequence = TTTTACGTTAACGTAAGA Gene: swp_1433: malate synthase A |
*
Shewanella sediminis HAW-EB3 Site: position = -523 score = 5.08934 sequence = GTTAACGTAAACGTAACA Gene: Ssed_1414: malate synthase A |
*
Shewanella woodyi ATCC 51908 Site: position = -553 score = 5.36161 sequence = GTTTACGTAAAGGTAATA Gene: Swoo_1528: malate synthase A |
malate synthase A |
| aceA |
Gene: SO_1484: isocitrate lyase |
Gene: Sputcn32_1239: isocitrate lyase |
Gene: Sputw3181_2865: isocitrate lyase |
Gene: Shewana3_2942: isocitrate lyase |
Gene: Shewmr4_2766: isocitrate lyase |
Gene: Shewmr7_2844: isocitrate lyase |
Gene: Sbal_1317: isocitrate lyase |
Gene: Sden_1246: isocitrate lyase |
Gene: Sfri_1102: isocitrate lyase |
Gene: Sama_2380: isocitrate lyase |
Gene: Shew_1276: isocitrate lyase |
|
|
|
Gene: Ssed_1415: isocitrate lyase |
|
isocitrate lyase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |