Regulon of LiuR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shal_2901
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	28
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -185 Score: 6.2 Sequence: GTTTACGTTAAGGTAAAC Locus tag: Shal_1061 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Shal_1060 Name: gltD Funciton: glutamate synthase, small subunit
	Shal_1061	gltB	glutamate synthase, large subunit
	Shal_1060	gltD	glutamate synthase, small subunit
Position: -92 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Shal_2234 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Shal_2233 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Shal_2232 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Shal_2234	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Shal_2233	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Shal_2232	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -174 Score: 6.5 Sequence: CTTTACGTTAACGTAAAG Locus tag: Shal_1711 Name: ldh Funciton: leucine dehydrogenase
	Shal_1711	ldh	leucine dehydrogenase
Position: -609 Score: 4.9 Sequence: GTTAACGTAAACGTTAGG Locus tag: Shal_1352 Name: aceB Funciton: malate synthase A
	Shal_1352	aceB	malate synthase A
Position: -368 Score: 5.2 Sequence: GTTTACGTAAGCGTAACT Locus tag: Shal_1114 Name: thrA Funciton: aspartate kinase Locus tag: Shal_1115 Name: thrB Funciton: homoserine kinase Locus tag: Shal_1116 Name: thrC Funciton: threonine synthase
	Shal_1114	thrA	aspartate kinase
	Shal_1115	thrB	homoserine kinase
	Shal_1116	thrC	threonine synthase
Position: -62 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Shal_2901 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Shal_2902 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Shal_2903 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Shal_2904 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Shal_2905 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Shal_2906 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Shal_2907 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Shal_2908 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Shal_2909 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Shal_2901	liuR	branched chain amino acid metabolism regulator, MerR family
	Shal_2902	liuA	isovaleryl-CoA dehydrogenase
	Shal_2903	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Shal_2904	liuC	methylglutaconyl-CoA hydratase
	Shal_2905	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Shal_2906	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Shal_2907	liuE	hydroxymethylglutaryl-CoA lyase
	Shal_2908	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Shal_2909	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -168 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Shal_2878 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Shal_2877 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Shal_2876 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Shal_2875 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Shal_2874 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Shal_2873 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Shal_2872 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Shal_2878	ivdA	3-ketoacyl-CoA thiolase
	Shal_2877	ivdB	methylmalonate-semialdehyde dehydrogenase
	Shal_2876	ivdC	branched-chain acyl-CoA dehydrogenase
	Shal_2875	ivdD	enoyl-CoA hydratase
	Shal_2874	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Shal_2873	ivdF	3-hydroxyisobutyrate dehydrogenase
	Shal_2872	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -120 Score: 5.7 Sequence: GTTGACGTTAACGTTAAC Locus tag: Shal_2945 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Shal_2944 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Shal_2945	etfB	electron transfer flavoprotein, beta subunit
	Shal_2944	etfA	electron transfer flavoprotein, alpha subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella halifaxensis HAW-EB4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --