Regulon of LiuR in Shewanella halifaxensis HAW-EB4
| Regulator type: | Transcription factor |
| TF locus tag: | Shal_2901 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 28 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - LiuR
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -185
Score: 6.2 Sequence: GTTTACGTTAAGGTAAAC
Locus tag: Shal_1061
Name: gltB Funciton: glutamate synthase, large subunit
Locus tag: Shal_1060
Name: gltD Funciton: glutamate synthase, small subunit |
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gltB
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glutamate synthase, large subunit
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gltD
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glutamate synthase, small subunit
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Position: -92
Score: 6.2 Sequence: GTTTACGTTAACGTAATG
Locus tag: Shal_2234
Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
Locus tag: Shal_2233
Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
Locus tag: Shal_2232
Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
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bkdA1
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3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
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bkdA2
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3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
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bkdB
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3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
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Position: -174
Score: 6.5 Sequence: CTTTACGTTAACGTAAAG
Locus tag: Shal_1711
Name: ldh Funciton: leucine dehydrogenase |
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ldh
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leucine dehydrogenase
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Position: -609
Score: 4.9 Sequence: GTTAACGTAAACGTTAGG
Locus tag: Shal_1352
Name: aceB Funciton: malate synthase A |
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aceB
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malate synthase A
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Position: -368
Score: 5.2 Sequence: GTTTACGTAAGCGTAACT
Locus tag: Shal_1114
Name: thrA Funciton: aspartate kinase
Locus tag: Shal_1115
Name: thrB Funciton: homoserine kinase
Locus tag: Shal_1116
Name: thrC Funciton: threonine synthase |
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thrA
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aspartate kinase
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thrB
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homoserine kinase
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thrC
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threonine synthase
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Position: -62
Score: 6 Sequence: CTTTACCTTTACGTAAAC
Locus tag: Shal_2901
Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Shal_2902
Name: liuA Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Shal_2903
Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Shal_2904
Name: liuC Funciton: methylglutaconyl-CoA hydratase
Locus tag: Shal_2905
Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shal_2906
Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Shal_2907
Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Shal_2908
Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Shal_2909
Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
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liuR
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branched chain amino acid metabolism regulator, MerR family
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liuA
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isovaleryl-CoA dehydrogenase
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liuB
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3-methylcrotonyl CoA carboxylase, beta subunit
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liuC
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methylglutaconyl-CoA hydratase
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liuD
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methylcrotonyl-CoA carboxylase, biotin-containing subunit
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liuD
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methylcrotonyl-CoA carboxylase, biotin-containing subunit
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liuE
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hydroxymethylglutaryl-CoA lyase
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liuF
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acetyl-CoA:acetoacetate-CoA transferase, beta subunit
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liuG
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acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
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Position: -168
Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Shal_2878
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Shal_2877
Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Shal_2876
Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Shal_2875
Name: ivdD Funciton: enoyl-CoA hydratase
Locus tag: Shal_2874
Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Shal_2873
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Shal_2872
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase |
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ivdA
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3-ketoacyl-CoA thiolase
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ivdB
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methylmalonate-semialdehyde dehydrogenase
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ivdC
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branched-chain acyl-CoA dehydrogenase
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ivdD
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enoyl-CoA hydratase
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ivdE
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3-hydroxyisobutyryl-CoA hydrolase
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ivdF
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3-hydroxyisobutyrate dehydrogenase
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ivdG
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3-hydroxyacyl-CoA dehydrogenase
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Position: -120
Score: 5.7 Sequence: GTTGACGTTAACGTTAAC
Locus tag: Shal_2945
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Shal_2944
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
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etfB
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electron transfer flavoprotein, beta subunit
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etfA
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electron transfer flavoprotein, alpha subunit
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |