Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator LiuR in Shewanellaceae

Properties
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO_2638 ldh -171 6 CCTTACGTTTACGTAAAG
SO_1325 gltB -188 5.9 GTTGACGTTAACGTCAAG
SO_2339 bkdA1 -90 6.2 GTTTACGTTAACGTAATG
SO_3145 etfB -98 5.2 ATTGACGTTAACGTTAAC
SO_1669 tyrR -122 6 CTTTACGTTTGCGTAAAC
SO_1677 ivdA -96 5.9 CTTTACGTTCGCGTAAAC
SO_1898 liuR -59 6 CTTTACCTTTACGTAAAC
SO_3415 thrA -372 5.7 CATTACGTTTACGTCAAC
SO_1483 aceB -524 6 GTTTACGTAAACGTAAAA
Shewanella putrefaciens CN-32
Sputcn32_2238 ldh -172 6 GCTTACGTTTACGTAAAG
Sputcn32_1136 gltB -187 5.8 GTTGACGTTAACGTAACG
Sputcn32_1885 bkdA1 -90 6.2 GTTTACGTTAACGTAATG
Sputcn32_2511 etfB -98 5.5 ATTGACGTTAACGTCAAC
Sputcn32_1388 tyrR -121 6 GTTTACGTTTGCGTAAAG
Sputcn32_1397 ivdA -104 5.9 CTTTACGTTCGCGTAAAC
Sputcn32_1720 liuR -59 6 CTTTACCTTTACGTAAAC
Sputcn32_2735 thrA -373 5.8 CGTTACGTTAACGTCAAC
Sputcn32_1238 aceB -456 6 GTTTACGTAAACGTAAAA
Shewanella sp W3-18-1
Sputw3181_1771 ldh -172 6 GCTTACGTTTACGTAAAG
Sputw3181_3028 gltB -187 5.9 GTTGACGTTAACGTAATG
Sputw3181_2123 bkdA1 -90 6.2 GTTTACGTTAACGTAATG
Sputw3181_1497 etfB -98 5.2 ATTGACGTTAACGTTAAC
Sputw3181_2713 tyrR -121 6 GTTTACGTTTGCGTAAAG
Sputw3181_2704 ivdA -104 5.9 CTTTACGTTCGCGTAAAC
Sputw3181_2305 liuR -59 6 CTTTACCTTTACGTAAAC
Sputw3181_1277 thrA -373 5.8 CGTTACGTTAACGTCAAC
Sputw3181_2866 aceB -455 6 GTTTACGTAAACGTAAAA
Shewanella sp ANA-3
Shewana3_1742 ldh -171 6 CCTTACGTTTACGTAAAG
Shewana3_3050 gltB -189 5.7 GTTAACGTTAACGTCAAG
Shewana3_2131 bkdA1 -90 6.2 GTTTACGTTAACGTAATG
Shewana3_1405 etfB -98 5.7 GTTGACGTTAACGTTAAC
Shewana3_2779 tyrR -137 5.7 TTTTACGTTTGCGTAAAC
Shewana3_2771 ivdA -96 5.9 CTTTACGTTCGCGTAAAC
Shewana3_1673 liuR -59 6 CTTTACCTTTACGTAAAC
Shewana3_1139 thrA -373 5.4 TATTACGTTTACGTCAAC
Shewana3_2943 aceB -524 5.6 GTTTACGTAAACGTAACA
Shewanella sp MR-4
Shewmr4_2872 gltB -188 5.7 GTTAACGTTAACGTCAAG
Shewmr4_2028 bkdA1 -90 6.2 GTTTACGTTAACGTAATG
Shewmr4_1352 etfB -98 5.7 GTTGACGTTAACGTTAAC
Shewmr4_2605 tyrR -137 5.7 TTTTACGTTTGCGTAAAC
Shewmr4_2597 ivdA -96 5.9 CTTTACGTTCGCGTAAAC
Shewmr4_2321 liuR -59 6 CTTTACCTTTACGTAAAC
Shewmr4_1138 thrA -373 5.7 CATTACGTTTACGTCAAC
Shewmr4_2767 aceB -524 5.7 GTTTACGTAAACGTAATA
Shewmr4_1598 ldh -171 6 CCTTACGTTTACGTAAAG
Shewanella sp MR-7
Shewmr7_2954 gltB -188 5.7 GTTAACGTTAACGTCAAG
Shewmr7_1947 bkdA1 -90 6.2 GTTTACGTTAACGTAATG
Shewmr7_1417 etfB -98 5.7 GTTGACGTTAACGTTAAC
Shewmr7_2672 tyrR -137 5.7 TTTTACGTTTGCGTAAAC
Shewmr7_2664 ivdA -96 5.9 CTTTACGTTCGCGTAAAC
Shewmr7_2393 liuR -59 6 CTTTACCTTTACGTAAAC
Shewmr7_1209 thrA -373 5.7 CATTACGTTTACGTCAAC
Shewmr7_2845 aceB -524 5.7 GTTTACGTAAACGTAATA
Shewmr7_1673 ldh -171 6 CCTTACGTTTACGTAAAG
Shewanella baltica OS155
Sbal_1178 gltB -189 6.2 GTTGACGTTAACGTAAAG
Sbal_2222 bkdA1 -90 6.2 GTTTACGTTAACGTAATG
Sbal_2847 etfB -98 5.7 GTTGACGTTAACGTTAAC
Sbal_1495 ivdA -100 5.9 CTTTACGTTCGCGTAAAC
Sbal_2827 liuR -59 6 CTTTACCTTTACGTAAAC
Sbal_1227 thrA -373 5.8 GATTACGTTAACGTCAAC
Sbal_1316 aceB -532 5.7 GTTTACGTAAACGTCAAA
Sbal_2483 ldh -151 6 GCTTACGTTTACGTAAAG
Shewanella denitrificans OS217
Sden_1823 ldh -157 6.4 CTTTACGTTTACGTAAAG
Sden_2790 gltB -188 6.2 GCTTACGTTAACGTAAAG
Sden_1786 bkdA1 -83 6.2 GTTTACGTTAACGTAATG
Sden_2539 etfB -97 5.9 GTTGACGTTAACGTCAAC
Sden_1943 ivdA -97 6.2 CTTTACGTTAGCGTAAAC
Sden_2244 liuR -58 6 CTTTACCTTTACGTAAAC
Sden_2740 thrA -466 6 CCTTACGTTTACGTAAAG
Sden_1245 aceB -487 5.7 GTTTACGTAAACGTAAGA
Shewanella frigidimarina NCIMB 400
Sfri_2265 ldh -195 6.4 CTTTACGTTTACGTAAAG
Sfri_2951 gltB -186 6.2 GTTTACGTTAACGTCAAG
Sfri_1935 bkdA1 -86 6.2 GTTTACGTTAACGTAATG
Sfri_2748 etfB -99 5.2 ATTGACGTTAACGTTAAC
Sfri_1330 tyrR -140 5.1 TGTTACGTTAACGTAACA
Sfri_1338 ivdA -78 5.6 CTTTACGTTCGCGTCAAC
Sfri_2726 liuR -59 6 CTTTACCTTTACGTAAAC
Sfri_2906 thrA -436 4.8 GTTTACGTCAACGTTAGA
Sfri_1101 aceB -615 5.6 TGTTACGTTTACGTAAAG
Shewanella amazonensis SB2B
Sama_0857 gltB -191 5.8 GTTGACGTTAACGTAACC
Sama_1709 bkdA1 -81 6.2 GTTTACGTTAACGTAATG
Sama_1169 etfB -106 5.5 GTTGACGTTTACGTTAAC
Sama_1375 ivdA -110 5.9 CTTTACGTTCGCGTAAAC
Sama_1363 liuR -65 6 CTTTACCTTTACGTAAAC
Sama_0905 thrA -363 5.1 GGTTACCTTTACGTTAAG
Sama_2381 aceB -516 5.3 GTTTACGTAAAGGTAAGA
Sama_2067 ldh -164 6 CTTTACGTTGACGTAAAG
Shewanella loihica PV-4
Shew_1555 ldh -174 6.5 CTTTACGTTAACGTAAAG
Shew_1032 gltB -178 5.8 GTTGACGTTAACGTAAGG
Shew_1925 bkdA1 -105 5.7 GTTTACGTTAACGTAACT
Shew_2584 etfB -100 5.9 GTTGACGTTAACGTCAAC
Shew_1667 ivdA -105 5.9 CTTTACGTTCGCGTAAAC
Shew_2569 liuR -63 6 CTTTACCTTTACGTAAAC
Shew_1275 aceB -544 5.7 GTTTACGTAAACGTCAAA
Shewanella pealeana ATCC 700345
Spea_1013 gltB -184 5.8 GTTTACGTTAAGGTAAGC
Spea_2246 bkdA1 -91 6.2 GTTTACGTTAACGTAATG
Spea_2855 etfB -121 5.7 GTTGACGTTAACGTTAAC
Spea_2783 ivdA -168 5.9 CTTTACGTTCGCGTAAAC
Spea_2796 liuR -63 6 CTTTACCTTTACGTAAAC
Spea_1066 thrA -366 5.6 GTTTACGTAAGCGTAAGC
Spea_1290 aceB -573 5 TGTTACGTTTCCGTAAAC
Spea_2543 ldh -174 6.5 CTTTACGTTAACGTAAAG
Shewanella halifaxensis HAW-EB4
Shal_1061 gltB -185 6.2 GTTTACGTTAAGGTAAAC
Shal_2234 bkdA1 -92 6.2 GTTTACGTTAACGTAATG
Shal_2945 etfB -120 5.7 GTTGACGTTAACGTTAAC
Shal_2878 ivdA -168 5.9 CTTTACGTTCGCGTAAAC
Shal_2901 liuR -62 6 CTTTACCTTTACGTAAAC
Shal_1114 thrA -368 5.2 GTTTACGTAAGCGTAACT
Shal_1352 aceB -609 4.9 GTTAACGTAAACGTTAGG
Shal_1711 ldh -174 6.5 CTTTACGTTAACGTAAAG
Shewanella piezotolerans WP3
swp_3803 gltB -185 6 GTTTACGTAAAGGTAAAC
swp_2606 bkdA1 -92 6.2 GTTTACGTTAACGTAATG
swp_3472 etfB -116 5.9 GTTGACGTTAACGTCAAC
swp_3387 ivdA -206 5.9 CTTTACGTTCGCGTAAAC
swp_3441 liuR -28 6 CTTTACCTTTACGTAAAC
swp_3750 thrA -367 5.8 GTTTACGTTAACGTAACA
swp_1433 aceB -564 5.6 TTTTACGTTAACGTAAGA
swp_1857 ldh -175 6.5 CTTTACGTTAACGTAAAG
Shewanella sediminis HAW-EB3
Ssed_1126 gltB -177 6 GTTTACGTAAACGTCAAC
Ssed_2329 bkdA1 -103 6.2 GTTTACGTTAACGTAATG
Ssed_1445 etfB -96 5.7 GTTGACGTTAACGTTAAC
Ssed_1473 ivdA -122 5.9 CTTTACGTTCGCGTAAAC
Ssed_1459 liuR -60 6 CTTTACCTTTACGTAAAC
Ssed_1175 thrA -378 5.1 GCTTACGTTTACGTAACT
Ssed_1414 aceB -523 5.1 GTTAACGTAAACGTAACA
Ssed_1877 ldh -173 6.5 CTTTACGTTAACGTAAAG
Shewanella woodyi ATCC 51908
Swoo_2710 ldh -174 5.8 ATTGACGTTAACGTAAAG
Swoo_1221 gltB -179 6.2 GTTTACGTTAACGTAATG
Swoo_2278 bkdA1 -101 6.2 GTTTACGTTAACGTAATG
Swoo_3236 etfB -99 5.7 GTTGACGTTAACGTTAAC
Swoo_3202 ivdA -110 5.9 CTTTACGTTCGCGTAAAC
Swoo_3222 liuR -61 6 CTTTACCTTTACGTAAAC
Swoo_1270 thrA -377 4.8 TTTGCCGTAAACGTAAGG
Swoo_1528 aceB -553 5.4 GTTTACGTAAAGGTAATA
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