Profile of regulator LiuR in Shewanellaceae
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - LiuR
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_2638 | ldh | -171 | 6 | CCTTACGTTTACGTAAAG | |
| SO_1325 | gltB | -188 | 5.9 | GTTGACGTTAACGTCAAG | |
| SO_2339 | bkdA1 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| SO_3145 | etfB | -98 | 5.2 | ATTGACGTTAACGTTAAC | |
| SO_1669 | tyrR | -122 | 6 | CTTTACGTTTGCGTAAAC | |
| SO_1677 | ivdA | -96 | 5.9 | CTTTACGTTCGCGTAAAC | |
| SO_1898 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| SO_3415 | thrA | -372 | 5.7 | CATTACGTTTACGTCAAC | |
| SO_1483 | aceB | -524 | 6 | GTTTACGTAAACGTAAAA | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_2238 | ldh | -172 | 6 | GCTTACGTTTACGTAAAG | |
| Sputcn32_1136 | gltB | -187 | 5.8 | GTTGACGTTAACGTAACG | |
| Sputcn32_1885 | bkdA1 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| Sputcn32_2511 | etfB | -98 | 5.5 | ATTGACGTTAACGTCAAC | |
| Sputcn32_1388 | tyrR | -121 | 6 | GTTTACGTTTGCGTAAAG | |
| Sputcn32_1397 | ivdA | -104 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Sputcn32_1720 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Sputcn32_2735 | thrA | -373 | 5.8 | CGTTACGTTAACGTCAAC | |
| Sputcn32_1238 | aceB | -456 | 6 | GTTTACGTAAACGTAAAA | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_1771 | ldh | -172 | 6 | GCTTACGTTTACGTAAAG | |
| Sputw3181_3028 | gltB | -187 | 5.9 | GTTGACGTTAACGTAATG | |
| Sputw3181_2123 | bkdA1 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| Sputw3181_1497 | etfB | -98 | 5.2 | ATTGACGTTAACGTTAAC | |
| Sputw3181_2713 | tyrR | -121 | 6 | GTTTACGTTTGCGTAAAG | |
| Sputw3181_2704 | ivdA | -104 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Sputw3181_2305 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Sputw3181_1277 | thrA | -373 | 5.8 | CGTTACGTTAACGTCAAC | |
| Sputw3181_2866 | aceB | -455 | 6 | GTTTACGTAAACGTAAAA | |
| Shewanella sp ANA-3 | |||||
| Shewana3_1742 | ldh | -171 | 6 | CCTTACGTTTACGTAAAG | |
| Shewana3_3050 | gltB | -189 | 5.7 | GTTAACGTTAACGTCAAG | |
| Shewana3_2131 | bkdA1 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| Shewana3_1405 | etfB | -98 | 5.7 | GTTGACGTTAACGTTAAC | |
| Shewana3_2779 | tyrR | -137 | 5.7 | TTTTACGTTTGCGTAAAC | |
| Shewana3_2771 | ivdA | -96 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Shewana3_1673 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Shewana3_1139 | thrA | -373 | 5.4 | TATTACGTTTACGTCAAC | |
| Shewana3_2943 | aceB | -524 | 5.6 | GTTTACGTAAACGTAACA | |
| Shewanella sp MR-4 | |||||
| Shewmr4_2872 | gltB | -188 | 5.7 | GTTAACGTTAACGTCAAG | |
| Shewmr4_2028 | bkdA1 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| Shewmr4_1352 | etfB | -98 | 5.7 | GTTGACGTTAACGTTAAC | |
| Shewmr4_2605 | tyrR | -137 | 5.7 | TTTTACGTTTGCGTAAAC | |
| Shewmr4_2597 | ivdA | -96 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Shewmr4_2321 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Shewmr4_1138 | thrA | -373 | 5.7 | CATTACGTTTACGTCAAC | |
| Shewmr4_2767 | aceB | -524 | 5.7 | GTTTACGTAAACGTAATA | |
| Shewmr4_1598 | ldh | -171 | 6 | CCTTACGTTTACGTAAAG | |
| Shewanella sp MR-7 | |||||
| Shewmr7_2954 | gltB | -188 | 5.7 | GTTAACGTTAACGTCAAG | |
| Shewmr7_1947 | bkdA1 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| Shewmr7_1417 | etfB | -98 | 5.7 | GTTGACGTTAACGTTAAC | |
| Shewmr7_2672 | tyrR | -137 | 5.7 | TTTTACGTTTGCGTAAAC | |
| Shewmr7_2664 | ivdA | -96 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Shewmr7_2393 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Shewmr7_1209 | thrA | -373 | 5.7 | CATTACGTTTACGTCAAC | |
| Shewmr7_2845 | aceB | -524 | 5.7 | GTTTACGTAAACGTAATA | |
| Shewmr7_1673 | ldh | -171 | 6 | CCTTACGTTTACGTAAAG | |
| Shewanella baltica OS155 | |||||
| Sbal_1178 | gltB | -189 | 6.2 | GTTGACGTTAACGTAAAG | |
| Sbal_2222 | bkdA1 | -90 | 6.2 | GTTTACGTTAACGTAATG | |
| Sbal_2847 | etfB | -98 | 5.7 | GTTGACGTTAACGTTAAC | |
| Sbal_1495 | ivdA | -100 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Sbal_2827 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Sbal_1227 | thrA | -373 | 5.8 | GATTACGTTAACGTCAAC | |
| Sbal_1316 | aceB | -532 | 5.7 | GTTTACGTAAACGTCAAA | |
| Sbal_2483 | ldh | -151 | 6 | GCTTACGTTTACGTAAAG | |
| Shewanella denitrificans OS217 | |||||
| Sden_1823 | ldh | -157 | 6.4 | CTTTACGTTTACGTAAAG | |
| Sden_2790 | gltB | -188 | 6.2 | GCTTACGTTAACGTAAAG | |
| Sden_1786 | bkdA1 | -83 | 6.2 | GTTTACGTTAACGTAATG | |
| Sden_2539 | etfB | -97 | 5.9 | GTTGACGTTAACGTCAAC | |
| Sden_1943 | ivdA | -97 | 6.2 | CTTTACGTTAGCGTAAAC | |
| Sden_2244 | liuR | -58 | 6 | CTTTACCTTTACGTAAAC | |
| Sden_2740 | thrA | -466 | 6 | CCTTACGTTTACGTAAAG | |
| Sden_1245 | aceB | -487 | 5.7 | GTTTACGTAAACGTAAGA | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_2265 | ldh | -195 | 6.4 | CTTTACGTTTACGTAAAG | |
| Sfri_2951 | gltB | -186 | 6.2 | GTTTACGTTAACGTCAAG | |
| Sfri_1935 | bkdA1 | -86 | 6.2 | GTTTACGTTAACGTAATG | |
| Sfri_2748 | etfB | -99 | 5.2 | ATTGACGTTAACGTTAAC | |
| Sfri_1330 | tyrR | -140 | 5.1 | TGTTACGTTAACGTAACA | |
| Sfri_1338 | ivdA | -78 | 5.6 | CTTTACGTTCGCGTCAAC | |
| Sfri_2726 | liuR | -59 | 6 | CTTTACCTTTACGTAAAC | |
| Sfri_2906 | thrA | -436 | 4.8 | GTTTACGTCAACGTTAGA | |
| Sfri_1101 | aceB | -615 | 5.6 | TGTTACGTTTACGTAAAG | |
| Shewanella amazonensis SB2B | |||||
| Sama_0857 | gltB | -191 | 5.8 | GTTGACGTTAACGTAACC | |
| Sama_1709 | bkdA1 | -81 | 6.2 | GTTTACGTTAACGTAATG | |
| Sama_1169 | etfB | -106 | 5.5 | GTTGACGTTTACGTTAAC | |
| Sama_1375 | ivdA | -110 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Sama_1363 | liuR | -65 | 6 | CTTTACCTTTACGTAAAC | |
| Sama_0905 | thrA | -363 | 5.1 | GGTTACCTTTACGTTAAG | |
| Sama_2381 | aceB | -516 | 5.3 | GTTTACGTAAAGGTAAGA | |
| Sama_2067 | ldh | -164 | 6 | CTTTACGTTGACGTAAAG | |
| Shewanella loihica PV-4 | |||||
| Shew_1555 | ldh | -174 | 6.5 | CTTTACGTTAACGTAAAG | |
| Shew_1032 | gltB | -178 | 5.8 | GTTGACGTTAACGTAAGG | |
| Shew_1925 | bkdA1 | -105 | 5.7 | GTTTACGTTAACGTAACT | |
| Shew_2584 | etfB | -100 | 5.9 | GTTGACGTTAACGTCAAC | |
| Shew_1667 | ivdA | -105 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Shew_2569 | liuR | -63 | 6 | CTTTACCTTTACGTAAAC | |
| Shew_1275 | aceB | -544 | 5.7 | GTTTACGTAAACGTCAAA | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_1013 | gltB | -184 | 5.8 | GTTTACGTTAAGGTAAGC | |
| Spea_2246 | bkdA1 | -91 | 6.2 | GTTTACGTTAACGTAATG | |
| Spea_2855 | etfB | -121 | 5.7 | GTTGACGTTAACGTTAAC | |
| Spea_2783 | ivdA | -168 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Spea_2796 | liuR | -63 | 6 | CTTTACCTTTACGTAAAC | |
| Spea_1066 | thrA | -366 | 5.6 | GTTTACGTAAGCGTAAGC | |
| Spea_1290 | aceB | -573 | 5 | TGTTACGTTTCCGTAAAC | |
| Spea_2543 | ldh | -174 | 6.5 | CTTTACGTTAACGTAAAG | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_1061 | gltB | -185 | 6.2 | GTTTACGTTAAGGTAAAC | |
| Shal_2234 | bkdA1 | -92 | 6.2 | GTTTACGTTAACGTAATG | |
| Shal_2945 | etfB | -120 | 5.7 | GTTGACGTTAACGTTAAC | |
| Shal_2878 | ivdA | -168 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Shal_2901 | liuR | -62 | 6 | CTTTACCTTTACGTAAAC | |
| Shal_1114 | thrA | -368 | 5.2 | GTTTACGTAAGCGTAACT | |
| Shal_1352 | aceB | -609 | 4.9 | GTTAACGTAAACGTTAGG | |
| Shal_1711 | ldh | -174 | 6.5 | CTTTACGTTAACGTAAAG | |
| Shewanella piezotolerans WP3 | |||||
| swp_3803 | gltB | -185 | 6 | GTTTACGTAAAGGTAAAC | |
| swp_2606 | bkdA1 | -92 | 6.2 | GTTTACGTTAACGTAATG | |
| swp_3472 | etfB | -116 | 5.9 | GTTGACGTTAACGTCAAC | |
| swp_3387 | ivdA | -206 | 5.9 | CTTTACGTTCGCGTAAAC | |
| swp_3441 | liuR | -28 | 6 | CTTTACCTTTACGTAAAC | |
| swp_3750 | thrA | -367 | 5.8 | GTTTACGTTAACGTAACA | |
| swp_1433 | aceB | -564 | 5.6 | TTTTACGTTAACGTAAGA | |
| swp_1857 | ldh | -175 | 6.5 | CTTTACGTTAACGTAAAG | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_1126 | gltB | -177 | 6 | GTTTACGTAAACGTCAAC | |
| Ssed_2329 | bkdA1 | -103 | 6.2 | GTTTACGTTAACGTAATG | |
| Ssed_1445 | etfB | -96 | 5.7 | GTTGACGTTAACGTTAAC | |
| Ssed_1473 | ivdA | -122 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Ssed_1459 | liuR | -60 | 6 | CTTTACCTTTACGTAAAC | |
| Ssed_1175 | thrA | -378 | 5.1 | GCTTACGTTTACGTAACT | |
| Ssed_1414 | aceB | -523 | 5.1 | GTTAACGTAAACGTAACA | |
| Ssed_1877 | ldh | -173 | 6.5 | CTTTACGTTAACGTAAAG | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_2710 | ldh | -174 | 5.8 | ATTGACGTTAACGTAAAG | |
| Swoo_1221 | gltB | -179 | 6.2 | GTTTACGTTAACGTAATG | |
| Swoo_2278 | bkdA1 | -101 | 6.2 | GTTTACGTTAACGTAATG | |
| Swoo_3236 | etfB | -99 | 5.7 | GTTGACGTTAACGTTAAC | |
| Swoo_3202 | ivdA | -110 | 5.9 | CTTTACGTTCGCGTAAAC | |
| Swoo_3222 | liuR | -61 | 6 | CTTTACCTTTACGTAAAC | |
| Swoo_1270 | thrA | -377 | 4.8 | TTTGCCGTAAACGTAAGG | |
| Swoo_1528 | aceB | -553 | 5.4 | GTTTACGTAAAGGTAATA | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |