Regulon of LiuR in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_1363 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 28 |
| - Operons | 8 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - LiuR
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -191
Score: 5.8 Sequence: GTTGACGTTAACGTAACC
Locus tag: Sama_0857
Name: gltB Funciton: glutamate synthase, large subunit
Locus tag: Sama_0856
Name: gltD Funciton: glutamate synthase, small subunit |
|||
|
gltB
|
glutamate synthase, large subunit
|
||
|
gltD
|
glutamate synthase, small subunit
|
||
|
Position: -81
Score: 6.2 Sequence: GTTTACGTTAACGTAATG
Locus tag: Sama_1709
Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
Locus tag: Sama_1710
Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
Locus tag: Sama_1711
Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component |
|||
|
bkdA1
|
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
|
||
|
bkdA2
|
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
|
||
|
bkdB
|
3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
|
||
|
Position: -164
Score: 6 Sequence: CTTTACGTTGACGTAAAG
Locus tag: Sama_2067
Name: ldh Funciton: leucine dehydrogenase |
|||
|
ldh
|
leucine dehydrogenase
|
||
|
Position: -516
Score: 5.3 Sequence: GTTTACGTAAAGGTAAGA
Locus tag: Sama_2381
Name: aceB Funciton: malate synthase A
Locus tag: Sama_2380
Name: null Funciton: isocitrate lyase |
|||
|
aceB
|
malate synthase A
|
||
|
isocitrate lyase
|
|||
|
Position: -363
Score: 5.1 Sequence: GGTTACCTTTACGTTAAG
Locus tag: Sama_0905
Name: thrA Funciton: aspartate kinase
Locus tag: Sama_0906
Name: thrB Funciton: homoserine kinase
Locus tag: Sama_0907
Name: thrC Funciton: threonine synthase |
|||
|
thrA
|
aspartate kinase
|
||
|
thrB
|
homoserine kinase
|
||
|
thrC
|
threonine synthase
|
||
|
Position: -65
Score: 6 Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sama_1363
Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sama_1362
Name: liuA Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sama_1361
Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sama_1360
Name: liuC Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sama_1359
Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sama_1358
Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sama_1357
Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sama_1356
Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit |
|||
|
liuR
|
branched chain amino acid metabolism regulator, MerR family
|
||
|
liuA
|
isovaleryl-CoA dehydrogenase
|
||
|
liuB
|
3-methylcrotonyl CoA carboxylase, beta subunit
|
||
|
liuC
|
methylglutaconyl-CoA hydratase
|
||
|
liuD
|
methylcrotonyl-CoA carboxylase, biotin-containing subunit
|
||
|
liuE
|
hydroxymethylglutaryl-CoA lyase
|
||
|
liuF
|
acetyl-CoA:acetoacetate-CoA transferase, beta subunit
|
||
|
liuG
|
acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
|
||
|
Position: -110
Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Sama_1375
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sama_1376
Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sama_1377
Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sama_1378
Name: ivdD Funciton: enoyl-CoA hydratase
Locus tag: Sama_1379
Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sama_1380
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sama_1381
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase |
|||
|
ivdA
|
3-ketoacyl-CoA thiolase
|
||
|
ivdB
|
methylmalonate-semialdehyde dehydrogenase
|
||
|
ivdC
|
branched-chain acyl-CoA dehydrogenase
|
||
|
ivdD
|
enoyl-CoA hydratase
|
||
|
ivdE
|
3-hydroxyisobutyryl-CoA hydrolase
|
||
|
ivdF
|
3-hydroxyisobutyrate dehydrogenase
|
||
|
ivdG
|
3-hydroxyacyl-CoA dehydrogenase
|
||
|
Position: -106
Score: 5.5 Sequence: GTTGACGTTTACGTTAAC
Locus tag: Sama_1169
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Sama_1170
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
|||
|
etfB
|
electron transfer flavoprotein, beta subunit
|
||
|
etfA
|
electron transfer flavoprotein, alpha subunit
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |