Regulon of LiuR in Shewanella amazonensis SB2B

Properties
Regulator type:	Transcription factor
TF locus tag:	Sama_1363
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	28
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -191 Score: 5.8 Sequence: GTTGACGTTAACGTAACC Locus tag: Sama_0857 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Sama_0856 Name: gltD Funciton: glutamate synthase, small subunit
	Sama_0857	gltB	glutamate synthase, large subunit
	Sama_0856	gltD	glutamate synthase, small subunit
Position: -81 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Sama_1709 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Sama_1710 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Sama_1711 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Sama_1709	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Sama_1710	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Sama_1711	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -164 Score: 6 Sequence: CTTTACGTTGACGTAAAG Locus tag: Sama_2067 Name: ldh Funciton: leucine dehydrogenase
	Sama_2067	ldh	leucine dehydrogenase
Position: -516 Score: 5.3 Sequence: GTTTACGTAAAGGTAAGA Locus tag: Sama_2381 Name: aceB Funciton: malate synthase A Locus tag: Sama_2380 Name: null Funciton: isocitrate lyase
	Sama_2381	aceB	malate synthase A
	Sama_2380		isocitrate lyase
Position: -363 Score: 5.1 Sequence: GGTTACCTTTACGTTAAG Locus tag: Sama_0905 Name: thrA Funciton: aspartate kinase Locus tag: Sama_0906 Name: thrB Funciton: homoserine kinase Locus tag: Sama_0907 Name: thrC Funciton: threonine synthase
	Sama_0905	thrA	aspartate kinase
	Sama_0906	thrB	homoserine kinase
	Sama_0907	thrC	threonine synthase
Position: -65 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Sama_1363 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Sama_1362 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Sama_1361 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Sama_1360 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Sama_1359 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Sama_1358 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Sama_1357 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Sama_1356 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Sama_1363	liuR	branched chain amino acid metabolism regulator, MerR family
	Sama_1362	liuA	isovaleryl-CoA dehydrogenase
	Sama_1361	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Sama_1360	liuC	methylglutaconyl-CoA hydratase
	Sama_1359	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Sama_1358	liuE	hydroxymethylglutaryl-CoA lyase
	Sama_1357	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Sama_1356	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -110 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Sama_1375 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Sama_1376 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Sama_1377 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Sama_1378 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Sama_1379 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Sama_1380 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Sama_1381 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Sama_1375	ivdA	3-ketoacyl-CoA thiolase
	Sama_1376	ivdB	methylmalonate-semialdehyde dehydrogenase
	Sama_1377	ivdC	branched-chain acyl-CoA dehydrogenase
	Sama_1378	ivdD	enoyl-CoA hydratase
	Sama_1379	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Sama_1380	ivdF	3-hydroxyisobutyrate dehydrogenase
	Sama_1381	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -106 Score: 5.5 Sequence: GTTGACGTTTACGTTAAC Locus tag: Sama_1169 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sama_1170 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sama_1169	etfB	electron transfer flavoprotein, beta subunit
	Sama_1170	etfA	electron transfer flavoprotein, alpha subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella amazonensis SB2B

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --