Regulon of LiuR in Shewanella loihica PV-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shew_2569
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	25
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -178 Score: 5.8 Sequence: GTTGACGTTAACGTAAGG Locus tag: Shew_1032 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Shew_1031 Name: gltD Funciton: glutamate synthase, small subunit
	Shew_1032	gltB	glutamate synthase, large subunit
	Shew_1031	gltD	glutamate synthase, small subunit
Position: -105 Score: 5.7 Sequence: GTTTACGTTAACGTAACT Locus tag: Shew_1925 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Shew_1926 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Shew_1927 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Shew_1925	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Shew_1926	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Shew_1927	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -174 Score: 6.5 Sequence: CTTTACGTTAACGTAAAG Locus tag: Shew_1555 Name: ldh Funciton: leucine dehydrogenase
	Shew_1555	ldh	leucine dehydrogenase
Position: -544 Score: 5.7 Sequence: GTTTACGTAAACGTCAAA Locus tag: Shew_1275 Name: aceB Funciton: malate synthase A Locus tag: Shew_1276 Name: null Funciton: isocitrate lyase
	Shew_1275	aceB	malate synthase A
	Shew_1276		isocitrate lyase
Position: -63 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Shew_2569 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Shew_2570 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Shew_2571 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Shew_2572 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Shew_2573 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Shew_2574 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Shew_2575 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Shew_2576 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Shew_2569	liuR	branched chain amino acid metabolism regulator, MerR family
	Shew_2570	liuA	isovaleryl-CoA dehydrogenase
	Shew_2571	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Shew_2572	liuC	methylglutaconyl-CoA hydratase
	Shew_2573	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Shew_2574	liuE	hydroxymethylglutaryl-CoA lyase
	Shew_2575	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Shew_2576	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -105 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Shew_1667 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Shew_1668 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Shew_1669 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Shew_1670 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Shew_1671 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Shew_1672 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Shew_1673 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Shew_1667	ivdA	3-ketoacyl-CoA thiolase
	Shew_1668	ivdB	methylmalonate-semialdehyde dehydrogenase
	Shew_1669	ivdC	branched-chain acyl-CoA dehydrogenase
	Shew_1670	ivdD	enoyl-CoA hydratase
	Shew_1671	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Shew_1672	ivdF	3-hydroxyisobutyrate dehydrogenase
	Shew_1673	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -100 Score: 5.9 Sequence: GTTGACGTTAACGTCAAC Locus tag: Shew_2584 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Shew_2583 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Shew_2584	etfB	electron transfer flavoprotein, beta subunit
	Shew_2583	etfA	electron transfer flavoprotein, alpha subunit

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella loihica PV-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --