Regulon of LiuR in Shewanella denitrificans OS217

Properties
Regulator type:	Transcription factor
TF locus tag:	Sden_2244
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	29
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -157 Score: 6.4 Sequence: CTTTACGTTTACGTAAAG Locus tag: Sden_1823 Name: ldh Funciton: leucine dehydrogenase
	Sden_1823	ldh	leucine dehydrogenase
Position: -188 Score: 6.2 Sequence: GCTTACGTTAACGTAAAG Locus tag: Sden_2790 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Sden_2791 Name: gltD Funciton: glutamate synthase, small subunit
	Sden_2790	gltB	glutamate synthase, large subunit
	Sden_2791	gltD	glutamate synthase, small subunit
Position: -487 Score: 5.7 Sequence: GTTTACGTAAACGTAAGA Locus tag: Sden_1245 Name: aceB Funciton: malate synthase A Locus tag: Sden_1246 Name: null Funciton: isocitrate lyase
	Sden_1245	aceB	malate synthase A
	Sden_1246		isocitrate lyase
Position: -466 Score: 6 Sequence: CCTTACGTTTACGTAAAG Locus tag: Sden_2740 Name: thrA Funciton: aspartate kinase Locus tag: Sden_2739 Name: thrB Funciton: homoserine kinase Locus tag: Sden_2738 Name: thrC Funciton: threonine synthase
	Sden_2740	thrA	aspartate kinase
	Sden_2739	thrB	homoserine kinase
	Sden_2738	thrC	threonine synthase
Position: -58 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Sden_2244 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Sden_2245 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Sden_2246 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Sden_2247 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Sden_2248 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Sden_2249 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Sden_2250 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Sden_2251 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Sden_2252 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Sden_2244	liuR	branched chain amino acid metabolism regulator, MerR family
	Sden_2245	liuA	isovaleryl-CoA dehydrogenase
	Sden_2246	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Sden_2247	liuC	methylglutaconyl-CoA hydratase
	Sden_2248	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Sden_2249	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Sden_2250	liuE	hydroxymethylglutaryl-CoA lyase
	Sden_2251	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Sden_2252	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -97 Score: 6.2 Sequence: CTTTACGTTAGCGTAAAC Locus tag: Sden_1943 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Sden_1942 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Sden_1941 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Sden_1940 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Sden_1939 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Sden_1938 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Sden_1937 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Sden_1943	ivdA	3-ketoacyl-CoA thiolase
	Sden_1942	ivdB	methylmalonate-semialdehyde dehydrogenase
	Sden_1941	ivdC	branched-chain acyl-CoA dehydrogenase
	Sden_1940	ivdD	enoyl-CoA hydratase
	Sden_1939	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Sden_1938	ivdF	3-hydroxyisobutyrate dehydrogenase
	Sden_1937	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -97 Score: 5.9 Sequence: GTTGACGTTAACGTCAAC Locus tag: Sden_2539 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sden_2538 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sden_2539	etfB	electron transfer flavoprotein, beta subunit
	Sden_2538	etfA	electron transfer flavoprotein, alpha subunit
Position: -83 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Sden_1786 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Sden_1787 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Sden_1788 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Sden_1786	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Sden_1787	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Sden_1788	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella denitrificans OS217

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --