Regulon of LiuR in Shewanella woodyi ATCC 51908

Properties
Regulator type:	Transcription factor
TF locus tag:	Swoo_3222
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	27
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -179 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Swoo_1221 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Swoo_1220 Name: gltD Funciton: glutamate synthase, small subunit
	Swoo_1221	gltB	glutamate synthase, large subunit
	Swoo_1220	gltD	glutamate synthase, small subunit
Position: -174 Score: 5.8 Sequence: ATTGACGTTAACGTAAAG Locus tag: Swoo_2710 Name: ldh Funciton: leucine dehydrogenase
	Swoo_2710	ldh	leucine dehydrogenase
Position: -553 Score: 5.4 Sequence: GTTTACGTAAAGGTAATA Locus tag: Swoo_1528 Name: aceB Funciton: malate synthase A
	Swoo_1528	aceB	malate synthase A
Position: -377 Score: 4.8 Sequence: TTTGCCGTAAACGTAAGG Locus tag: Swoo_1270 Name: thrA Funciton: aspartate kinase Locus tag: Swoo_1271 Name: thrB Funciton: homoserine kinase Locus tag: Swoo_1272 Name: thrC Funciton: threonine synthase
	Swoo_1270	thrA	aspartate kinase
	Swoo_1271	thrB	homoserine kinase
	Swoo_1272	thrC	threonine synthase
Position: -61 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Swoo_3222 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Swoo_3223 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Swoo_3224 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Swoo_3225 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Swoo_3226 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Swoo_3227 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Swoo_3228 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Swoo_3229 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Swoo_3222	liuR	branched chain amino acid metabolism regulator, MerR family
	Swoo_3223	liuA	isovaleryl-CoA dehydrogenase
	Swoo_3224	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Swoo_3225	liuC	methylglutaconyl-CoA hydratase
	Swoo_3226	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Swoo_3227	liuE	hydroxymethylglutaryl-CoA lyase
	Swoo_3228	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Swoo_3229	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -110 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Swoo_3202 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Swoo_3201 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Swoo_3200 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Swoo_3199 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Swoo_3198 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Swoo_3197 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Swoo_3196 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Swoo_3202	ivdA	3-ketoacyl-CoA thiolase
	Swoo_3201	ivdB	methylmalonate-semialdehyde dehydrogenase
	Swoo_3200	ivdC	branched-chain acyl-CoA dehydrogenase
	Swoo_3199	ivdD	enoyl-CoA hydratase
	Swoo_3198	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Swoo_3197	ivdF	3-hydroxyisobutyrate dehydrogenase
	Swoo_3196	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -99 Score: 5.7 Sequence: GTTGACGTTAACGTTAAC Locus tag: Swoo_3236 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Swoo_3235 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Swoo_3236	etfB	electron transfer flavoprotein, beta subunit
	Swoo_3235	etfA	electron transfer flavoprotein, alpha subunit
Position: -101 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Swoo_2278 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Swoo_2279 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Swoo_2280 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Swoo_2278	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Swoo_2279	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Swoo_2280	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella woodyi ATCC 51908

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --