Regulon of LiuR in Shewanella putrefaciens CN-32

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputcn32_1720
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	29
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -172 Score: 6 Sequence: GCTTACGTTTACGTAAAG Locus tag: Sputcn32_2238 Name: ldh Funciton: leucine dehydrogenase
	Sputcn32_2238	ldh	leucine dehydrogenase
Position: -187 Score: 5.8 Sequence: GTTGACGTTAACGTAACG Locus tag: Sputcn32_1136 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Sputcn32_1135 Name: gltD Funciton: glutamate synthase, small subunit
	Sputcn32_1136	gltB	glutamate synthase, large subunit
	Sputcn32_1135	gltD	glutamate synthase, small subunit
Position: -456 Score: 6 Sequence: GTTTACGTAAACGTAAAA Locus tag: Sputcn32_1238 Name: aceB Funciton: malate synthase A Locus tag: Sputcn32_1239 Name: null Funciton: isocitrate lyase
	Sputcn32_1238	aceB	malate synthase A
	Sputcn32_1239		isocitrate lyase
Position: -373 Score: 5.8 Sequence: CGTTACGTTAACGTCAAC Locus tag: Sputcn32_2735 Name: thrA Funciton: aspartate kinase Locus tag: Sputcn32_2734 Name: thrB Funciton: homoserine kinase Locus tag: Sputcn32_2733 Name: thrC Funciton: threonine synthase
	Sputcn32_2735	thrA	aspartate kinase
	Sputcn32_2734	thrB	homoserine kinase
	Sputcn32_2733	thrC	threonine synthase
Position: -59 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Sputcn32_1720 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Sputcn32_1719 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Sputcn32_1718 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Sputcn32_1717 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Sputcn32_1716 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Sputcn32_1715 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Sputcn32_1714 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Sputcn32_1713 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Sputcn32_1720	liuR	branched chain amino acid metabolism regulator, MerR family
	Sputcn32_1719	liuA	isovaleryl-CoA dehydrogenase
	Sputcn32_1718	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Sputcn32_1717	liuC	methylglutaconyl-CoA hydratase
	Sputcn32_1716	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Sputcn32_1715	liuE	hydroxymethylglutaryl-CoA lyase
	Sputcn32_1714	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Sputcn32_1713	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -104 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Sputcn32_1397 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Sputcn32_1398 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Sputcn32_1399 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Sputcn32_1400 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Sputcn32_1401 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Sputcn32_1402 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Sputcn32_1403 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Sputcn32_1397	ivdA	3-ketoacyl-CoA thiolase
	Sputcn32_1398	ivdB	methylmalonate-semialdehyde dehydrogenase
	Sputcn32_1399	ivdC	branched-chain acyl-CoA dehydrogenase
	Sputcn32_1400	ivdD	enoyl-CoA hydratase
	Sputcn32_1401	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Sputcn32_1402	ivdF	3-hydroxyisobutyrate dehydrogenase
	Sputcn32_1403	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -121 Score: 6 Sequence: GTTTACGTTTGCGTAAAG Locus tag: Sputcn32_1388 Name: tyrR Funciton: aromatic amino acid biosynthesis/transport transciptional regulator
	Sputcn32_1388	tyrR	aromatic amino acid biosynthesis/transport transciptional regulator
Position: -98 Score: 5.5 Sequence: ATTGACGTTAACGTCAAC Locus tag: Sputcn32_2511 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sputcn32_2510 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sputcn32_2511	etfB	electron transfer flavoprotein, beta subunit
	Sputcn32_2510	etfA	electron transfer flavoprotein, alpha subunit
Position: -90 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Sputcn32_1885 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Sputcn32_1886 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Sputcn32_1887 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Sputcn32_1885	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Sputcn32_1886	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Sputcn32_1887	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella putrefaciens CN-32

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --