Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_2726
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes 29
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 134 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -195
Score: 6.4
Sequence: CTTTACGTTTACGTAAAG
Locus tag: Sfri_2265
Name: ldh
Funciton: leucine dehydrogenase
ldh
leucine dehydrogenase

Position: -186
Score: 6.2
Sequence: GTTTACGTTAACGTCAAG
Locus tag: Sfri_2951
Name: gltB
Funciton: glutamate synthase, large subunit
Locus tag: Sfri_2952
Name: gltD
Funciton: glutamate synthase, small subunit
gltB
glutamate synthase, large subunit
gltD
glutamate synthase, small subunit

Position: -615
Score: 5.6
Sequence: TGTTACGTTTACGTAAAG
Locus tag: Sfri_1101
Name: aceB
Funciton: malate synthase A
Locus tag: Sfri_1102
Name: null
Funciton: isocitrate lyase
aceB
malate synthase A
isocitrate lyase

Position: -436
Score: 4.8
Sequence: GTTTACGTCAACGTTAGA
Locus tag: Sfri_2906
Name: thrA
Funciton: aspartate kinase
Locus tag: Sfri_2905
Name: thrB
Funciton: homoserine kinase
Locus tag: Sfri_2904
Name: thrC
Funciton: threonine synthase
thrA
aspartate kinase
thrB
homoserine kinase
thrC
threonine synthase

Position: -59
Score: 6
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Sfri_2726
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: Sfri_2727
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: Sfri_2728
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: Sfri_2729
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: Sfri_2730
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: Sfri_2731
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
Locus tag: Sfri_2732
Name: liuF
Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit
Locus tag: Sfri_2733
Name: liuG
Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
liuR
branched chain amino acid metabolism regulator, MerR family
liuA
isovaleryl-CoA dehydrogenase
liuB
3-methylcrotonyl CoA carboxylase, beta subunit
liuC
methylglutaconyl-CoA hydratase
liuD
methylcrotonyl-CoA carboxylase, biotin-containing subunit
liuE
hydroxymethylglutaryl-CoA lyase
liuF
acetyl-CoA:acetoacetate-CoA transferase, beta subunit
liuG
acetyl-CoA:acetoacetate-CoA transferase, alpha subunit

Position: -78
Score: 5.6
Sequence: CTTTACGTTCGCGTCAAC
Locus tag: Sfri_1338
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: Sfri_1339
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: Sfri_1340
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: Sfri_1341
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: Sfri_1342
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: Sfri_1343
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: Sfri_1344
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA
3-ketoacyl-CoA thiolase
ivdB
methylmalonate-semialdehyde dehydrogenase
ivdC
branched-chain acyl-CoA dehydrogenase
ivdD
enoyl-CoA hydratase
ivdE
3-hydroxyisobutyryl-CoA hydrolase
ivdF
3-hydroxyisobutyrate dehydrogenase
ivdG
3-hydroxyacyl-CoA dehydrogenase

Position: -140
Score: 5.1
Sequence: TGTTACGTTAACGTAACA
Locus tag: Sfri_1330
Name: tyrR
Funciton: aromatic amino acid biosynthesis/transport transciptional regulator
tyrR
aromatic amino acid biosynthesis/transport transciptional regulator

Position: -99
Score: 5.2
Sequence: ATTGACGTTAACGTTAAC
Locus tag: Sfri_2748
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Sfri_2747
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
etfB
electron transfer flavoprotein, beta subunit
etfA
electron transfer flavoprotein, alpha subunit

Position: -86
Score: 6.2
Sequence: GTTTACGTTAACGTAATG
Locus tag: Sfri_1935
Name: bkdA1
Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
Locus tag: Sfri_1936
Name: bkdA2
Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
Locus tag: Sfri_1937
Name: bkdB
Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
bkdA1
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
bkdA2
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
bkdB
3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
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