Regulon of LiuR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_2726
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	29
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -195 Score: 6.4 Sequence: CTTTACGTTTACGTAAAG Locus tag: Sfri_2265 Name: ldh Funciton: leucine dehydrogenase
	Sfri_2265	ldh	leucine dehydrogenase
Position: -186 Score: 6.2 Sequence: GTTTACGTTAACGTCAAG Locus tag: Sfri_2951 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Sfri_2952 Name: gltD Funciton: glutamate synthase, small subunit
	Sfri_2951	gltB	glutamate synthase, large subunit
	Sfri_2952	gltD	glutamate synthase, small subunit
Position: -615 Score: 5.6 Sequence: TGTTACGTTTACGTAAAG Locus tag: Sfri_1101 Name: aceB Funciton: malate synthase A Locus tag: Sfri_1102 Name: null Funciton: isocitrate lyase
	Sfri_1101	aceB	malate synthase A
	Sfri_1102		isocitrate lyase
Position: -436 Score: 4.8 Sequence: GTTTACGTCAACGTTAGA Locus tag: Sfri_2906 Name: thrA Funciton: aspartate kinase Locus tag: Sfri_2905 Name: thrB Funciton: homoserine kinase Locus tag: Sfri_2904 Name: thrC Funciton: threonine synthase
	Sfri_2906	thrA	aspartate kinase
	Sfri_2905	thrB	homoserine kinase
	Sfri_2904	thrC	threonine synthase
Position: -59 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Sfri_2726 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Sfri_2727 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Sfri_2728 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Sfri_2729 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Sfri_2730 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Sfri_2731 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Sfri_2732 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Sfri_2733 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Sfri_2726	liuR	branched chain amino acid metabolism regulator, MerR family
	Sfri_2727	liuA	isovaleryl-CoA dehydrogenase
	Sfri_2728	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Sfri_2729	liuC	methylglutaconyl-CoA hydratase
	Sfri_2730	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Sfri_2731	liuE	hydroxymethylglutaryl-CoA lyase
	Sfri_2732	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Sfri_2733	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -78 Score: 5.6 Sequence: CTTTACGTTCGCGTCAAC Locus tag: Sfri_1338 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Sfri_1339 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Sfri_1340 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Sfri_1341 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Sfri_1342 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Sfri_1343 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Sfri_1344 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Sfri_1338	ivdA	3-ketoacyl-CoA thiolase
	Sfri_1339	ivdB	methylmalonate-semialdehyde dehydrogenase
	Sfri_1340	ivdC	branched-chain acyl-CoA dehydrogenase
	Sfri_1341	ivdD	enoyl-CoA hydratase
	Sfri_1342	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Sfri_1343	ivdF	3-hydroxyisobutyrate dehydrogenase
	Sfri_1344	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -140 Score: 5.1 Sequence: TGTTACGTTAACGTAACA Locus tag: Sfri_1330 Name: tyrR Funciton: aromatic amino acid biosynthesis/transport transciptional regulator
	Sfri_1330	tyrR	aromatic amino acid biosynthesis/transport transciptional regulator
Position: -99 Score: 5.2 Sequence: ATTGACGTTAACGTTAAC Locus tag: Sfri_2748 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sfri_2747 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sfri_2748	etfB	electron transfer flavoprotein, beta subunit
	Sfri_2747	etfA	electron transfer flavoprotein, alpha subunit
Position: -86 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Sfri_1935 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Sfri_1936 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Sfri_1937 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Sfri_1935	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Sfri_1936	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Sfri_1937	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella frigidimarina NCIMB 400

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --