Regulon of LiuR in Shewanella sp MR-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewmr4_2321
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	29
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -188 Score: 5.7 Sequence: GTTAACGTTAACGTCAAG Locus tag: Shewmr4_2872 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Shewmr4_2873 Name: gltD Funciton: glutamate synthase, small subunit
	Shewmr4_2872	gltB	glutamate synthase, large subunit
	Shewmr4_2873	gltD	glutamate synthase, small subunit
Position: -90 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Shewmr4_2028 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Shewmr4_2027 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Shewmr4_2026 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Shewmr4_2028	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Shewmr4_2027	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Shewmr4_2026	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -171 Score: 6 Sequence: CCTTACGTTTACGTAAAG Locus tag: Shewmr4_1598 Name: ldh Funciton: leucine dehydrogenase
	Shewmr4_1598	ldh	leucine dehydrogenase
Position: -524 Score: 5.7 Sequence: GTTTACGTAAACGTAATA Locus tag: Shewmr4_2767 Name: aceB Funciton: malate synthase A Locus tag: Shewmr4_2766 Name: null Funciton: isocitrate lyase
	Shewmr4_2767	aceB	malate synthase A
	Shewmr4_2766		isocitrate lyase
Position: -373 Score: 5.7 Sequence: CATTACGTTTACGTCAAC Locus tag: Shewmr4_1138 Name: thrA Funciton: aspartate kinase Locus tag: Shewmr4_1139 Name: thrB Funciton: homoserine kinase Locus tag: Shewmr4_1140 Name: thrC Funciton: threonine synthase
	Shewmr4_1138	thrA	aspartate kinase
	Shewmr4_1139	thrB	homoserine kinase
	Shewmr4_1140	thrC	threonine synthase
Position: -59 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Shewmr4_2321 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Shewmr4_2322 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Shewmr4_2323 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Shewmr4_2324 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Shewmr4_2325 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Shewmr4_2326 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Shewmr4_2327 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Shewmr4_2328 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Shewmr4_2321	liuR	branched chain amino acid metabolism regulator, MerR family
	Shewmr4_2322	liuA	isovaleryl-CoA dehydrogenase
	Shewmr4_2323	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Shewmr4_2324	liuC	methylglutaconyl-CoA hydratase
	Shewmr4_2325	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Shewmr4_2326	liuE	hydroxymethylglutaryl-CoA lyase
	Shewmr4_2327	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Shewmr4_2328	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -96 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Shewmr4_2597 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Shewmr4_2596 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Shewmr4_2595 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Shewmr4_2594 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Shewmr4_2593 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Shewmr4_2592 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Shewmr4_2591 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Shewmr4_2597	ivdA	3-ketoacyl-CoA thiolase
	Shewmr4_2596	ivdB	methylmalonate-semialdehyde dehydrogenase
	Shewmr4_2595	ivdC	branched-chain acyl-CoA dehydrogenase
	Shewmr4_2594	ivdD	enoyl-CoA hydratase
	Shewmr4_2593	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Shewmr4_2592	ivdF	3-hydroxyisobutyrate dehydrogenase
	Shewmr4_2591	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -137 Score: 5.7 Sequence: TTTTACGTTTGCGTAAAC Locus tag: Shewmr4_2605 Name: tyrR Funciton: aromatic amino acid biosynthesis/transport transciptional regulator
	Shewmr4_2605	tyrR	aromatic amino acid biosynthesis/transport transciptional regulator
Position: -98 Score: 5.7 Sequence: GTTGACGTTAACGTTAAC Locus tag: Shewmr4_1352 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Shewmr4_1353 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Shewmr4_1352	etfB	electron transfer flavoprotein, beta subunit
	Shewmr4_1353	etfA	electron transfer flavoprotein, alpha subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella sp MR-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --