Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_3441
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes 26
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 134 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -92
Score: 6.2
Sequence: GTTTACGTTAACGTAATG
Locus tag: swp_2606
Name: bkdA1
Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
Locus tag: swp_2605
Name: bkdA2
Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
Locus tag: swp_2604
Name: bkdB
Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
bkdA1
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
bkdA2
3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
bkdB
3-methyl-2-oxobutanoate dehydrogenase complex, E2 component

Position: -185
Score: 6
Sequence: GTTTACGTAAAGGTAAAC
Locus tag: swp_3803
Name: gltB
Funciton: glutamate synthase, large subunit
Locus tag: swp_3804
Name: gltD
Funciton: glutamate synthase, small subunit
gltB
glutamate synthase, large subunit
gltD
glutamate synthase, small subunit

Position: -175
Score: 6.5
Sequence: CTTTACGTTAACGTAAAG
Locus tag: swp_1857
Name: ldh
Funciton: leucine dehydrogenase
ldh
leucine dehydrogenase

Position: -564
Score: 5.6
Sequence: TTTTACGTTAACGTAAGA
Locus tag: swp_1433
Name: aceB
Funciton: malate synthase A
aceB
malate synthase A

Position: -367
Score: 5.8
Sequence: GTTTACGTTAACGTAACA
Locus tag: swp_3750
Name: thrA
Funciton: aspartate kinase
Locus tag: swp_3749
Name: thrB
Funciton: homoserine kinase
Locus tag: swp_3748
Name: thrC
Funciton: threonine synthase
thrA
aspartate kinase
thrB
homoserine kinase
thrC
threonine synthase

Position: -28
Score: 6
Sequence: CTTTACCTTTACGTAAAC
Locus tag: swp_3441
Name: liuR
Funciton: branched chain amino acid metabolism regulator, MerR family
Locus tag: swp_3442
Name: liuA
Funciton: isovaleryl-CoA dehydrogenase
Locus tag: swp_3443
Name: liuB
Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit
Locus tag: swp_3444
Name: liuC
Funciton: methylglutaconyl-CoA hydratase
Locus tag: swp_3445
Name: liuD
Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit
Locus tag: swp_3446
Name: null
Funciton: hypothetical protein swp_3446
Locus tag: swp_3448
Name: liuE
Funciton: hydroxymethylglutaryl-CoA lyase
liuR
branched chain amino acid metabolism regulator, MerR family
liuA
isovaleryl-CoA dehydrogenase
liuB
3-methylcrotonyl CoA carboxylase, beta subunit
liuC
methylglutaconyl-CoA hydratase
liuD
methylcrotonyl-CoA carboxylase, biotin-containing subunit
hypothetical protein swp_3446
liuE
hydroxymethylglutaryl-CoA lyase

Position: -206
Score: 5.9
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: swp_3387
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase
Locus tag: swp_3386
Name: ivdB
Funciton: methylmalonate-semialdehyde dehydrogenase
Locus tag: swp_3385
Name: ivdC
Funciton: branched-chain acyl-CoA dehydrogenase
Locus tag: swp_3384
Name: ivdD
Funciton: enoyl-CoA hydratase
Locus tag: swp_3383
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase
Locus tag: swp_3382
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase
Locus tag: swp_3381
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase
ivdA
3-ketoacyl-CoA thiolase
ivdB
methylmalonate-semialdehyde dehydrogenase
ivdC
branched-chain acyl-CoA dehydrogenase
ivdD
enoyl-CoA hydratase
ivdE
3-hydroxyisobutyryl-CoA hydrolase
ivdF
3-hydroxyisobutyrate dehydrogenase
ivdG
3-hydroxyacyl-CoA dehydrogenase

Position: -116
Score: 5.9
Sequence: GTTGACGTTAACGTCAAC
Locus tag: swp_3472
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: swp_3471
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
etfB
electron transfer flavoprotein, beta subunit
etfA
electron transfer flavoprotein, alpha subunit
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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