Regulon of LiuR in Shewanella piezotolerans WP3

Properties
Regulator type:	Transcription factor
TF locus tag:	swp_3441
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	26
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -92 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: swp_2606 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: swp_2605 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: swp_2604 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	swp_2606	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	swp_2605	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	swp_2604	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -185 Score: 6 Sequence: GTTTACGTAAAGGTAAAC Locus tag: swp_3803 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: swp_3804 Name: gltD Funciton: glutamate synthase, small subunit
	swp_3803	gltB	glutamate synthase, large subunit
	swp_3804	gltD	glutamate synthase, small subunit
Position: -175 Score: 6.5 Sequence: CTTTACGTTAACGTAAAG Locus tag: swp_1857 Name: ldh Funciton: leucine dehydrogenase
	swp_1857	ldh	leucine dehydrogenase
Position: -564 Score: 5.6 Sequence: TTTTACGTTAACGTAAGA Locus tag: swp_1433 Name: aceB Funciton: malate synthase A
	swp_1433	aceB	malate synthase A
Position: -367 Score: 5.8 Sequence: GTTTACGTTAACGTAACA Locus tag: swp_3750 Name: thrA Funciton: aspartate kinase Locus tag: swp_3749 Name: thrB Funciton: homoserine kinase Locus tag: swp_3748 Name: thrC Funciton: threonine synthase
	swp_3750	thrA	aspartate kinase
	swp_3749	thrB	homoserine kinase
	swp_3748	thrC	threonine synthase
Position: -28 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: swp_3441 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: swp_3442 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: swp_3443 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: swp_3444 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: swp_3445 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: swp_3446 Name: null Funciton: hypothetical protein swp_3446 Locus tag: swp_3448 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase
	swp_3441	liuR	branched chain amino acid metabolism regulator, MerR family
	swp_3442	liuA	isovaleryl-CoA dehydrogenase
	swp_3443	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	swp_3444	liuC	methylglutaconyl-CoA hydratase
	swp_3445	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	swp_3446		hypothetical protein swp_3446
	swp_3448	liuE	hydroxymethylglutaryl-CoA lyase
Position: -206 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: swp_3387 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: swp_3386 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: swp_3385 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: swp_3384 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: swp_3383 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: swp_3382 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: swp_3381 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	swp_3387	ivdA	3-ketoacyl-CoA thiolase
	swp_3386	ivdB	methylmalonate-semialdehyde dehydrogenase
	swp_3385	ivdC	branched-chain acyl-CoA dehydrogenase
	swp_3384	ivdD	enoyl-CoA hydratase
	swp_3383	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	swp_3382	ivdF	3-hydroxyisobutyrate dehydrogenase
	swp_3381	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -116 Score: 5.9 Sequence: GTTGACGTTAACGTCAAC Locus tag: swp_3472 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: swp_3471 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	swp_3472	etfB	electron transfer flavoprotein, beta subunit
	swp_3471	etfA	electron transfer flavoprotein, alpha subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella piezotolerans WP3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --