Regulon of LiuR in Shewanella pealeana ATCC 700345

Properties
Regulator type:	Transcription factor
TF locus tag:	Spea_2796
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	27
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -91 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Spea_2246 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Spea_2245 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Spea_2244 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Spea_2246	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Spea_2245	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Spea_2244	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -184 Score: 5.8 Sequence: GTTTACGTTAAGGTAAGC Locus tag: Spea_1013 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Spea_1012 Name: gltD Funciton: glutamate synthase, small subunit
	Spea_1013	gltB	glutamate synthase, large subunit
	Spea_1012	gltD	glutamate synthase, small subunit
Position: -174 Score: 6.5 Sequence: CTTTACGTTAACGTAAAG Locus tag: Spea_2543 Name: ldh Funciton: leucine dehydrogenase
	Spea_2543	ldh	leucine dehydrogenase
Position: -573 Score: 5 Sequence: TGTTACGTTTCCGTAAAC Locus tag: Spea_1290 Name: aceB Funciton: malate synthase A
	Spea_1290	aceB	malate synthase A
Position: -366 Score: 5.6 Sequence: GTTTACGTAAGCGTAAGC Locus tag: Spea_1066 Name: thrA Funciton: aspartate kinase Locus tag: Spea_1067 Name: thrB Funciton: homoserine kinase Locus tag: Spea_1068 Name: thrC Funciton: threonine synthase
	Spea_1066	thrA	aspartate kinase
	Spea_1067	thrB	homoserine kinase
	Spea_1068	thrC	threonine synthase
Position: -63 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Spea_2796 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Spea_2797 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Spea_2798 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Spea_2799 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Spea_2800 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Spea_2802 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Spea_2803 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Spea_2804 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Spea_2796	liuR	branched chain amino acid metabolism regulator, MerR family
	Spea_2797	liuA	isovaleryl-CoA dehydrogenase
	Spea_2798	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Spea_2799	liuC	methylglutaconyl-CoA hydratase
	Spea_2800	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Spea_2802	liuE	hydroxymethylglutaryl-CoA lyase
	Spea_2803	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Spea_2804	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -168 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Spea_2783 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Spea_2782 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Spea_2781 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Spea_2780 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Spea_2779 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Spea_2778 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Spea_2777 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Spea_2783	ivdA	3-ketoacyl-CoA thiolase
	Spea_2782	ivdB	methylmalonate-semialdehyde dehydrogenase
	Spea_2781	ivdC	branched-chain acyl-CoA dehydrogenase
	Spea_2780	ivdD	enoyl-CoA hydratase
	Spea_2779	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Spea_2778	ivdF	3-hydroxyisobutyrate dehydrogenase
	Spea_2777	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -121 Score: 5.7 Sequence: GTTGACGTTAACGTTAAC Locus tag: Spea_2855 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Spea_2854 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Spea_2855	etfB	electron transfer flavoprotein, beta subunit
	Spea_2854	etfA	electron transfer flavoprotein, alpha subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella pealeana ATCC 700345

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --