Regulon of LiuR in Shewanella sp ANA-3

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewana3_1673
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	29
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -171 Score: 6 Sequence: CCTTACGTTTACGTAAAG Locus tag: Shewana3_1742 Name: ldh Funciton: leucine dehydrogenase
	Shewana3_1742	ldh	leucine dehydrogenase
Position: -189 Score: 5.7 Sequence: GTTAACGTTAACGTCAAG Locus tag: Shewana3_3050 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Shewana3_3051 Name: gltD Funciton: glutamate synthase, small subunit
	Shewana3_3050	gltB	glutamate synthase, large subunit
	Shewana3_3051	gltD	glutamate synthase, small subunit
Position: -524 Score: 5.6 Sequence: GTTTACGTAAACGTAACA Locus tag: Shewana3_2943 Name: aceB Funciton: malate synthase A Locus tag: Shewana3_2942 Name: null Funciton: isocitrate lyase
	Shewana3_2943	aceB	malate synthase A
	Shewana3_2942		isocitrate lyase
Position: -373 Score: 5.4 Sequence: TATTACGTTTACGTCAAC Locus tag: Shewana3_1139 Name: thrA Funciton: aspartate kinase Locus tag: Shewana3_1140 Name: thrB Funciton: homoserine kinase Locus tag: Shewana3_1141 Name: thrC Funciton: threonine synthase
	Shewana3_1139	thrA	aspartate kinase
	Shewana3_1140	thrB	homoserine kinase
	Shewana3_1141	thrC	threonine synthase
Position: -59 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Shewana3_1673 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Shewana3_1672 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Shewana3_1671 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Shewana3_1670 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Shewana3_1669 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Shewana3_1668 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Shewana3_1667 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Shewana3_1666 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Shewana3_1673	liuR	branched chain amino acid metabolism regulator, MerR family
	Shewana3_1672	liuA	isovaleryl-CoA dehydrogenase
	Shewana3_1671	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Shewana3_1670	liuC	methylglutaconyl-CoA hydratase
	Shewana3_1669	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Shewana3_1668	liuE	hydroxymethylglutaryl-CoA lyase
	Shewana3_1667	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Shewana3_1666	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -96 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Shewana3_2771 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Shewana3_2770 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Shewana3_2769 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Shewana3_2768 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Shewana3_2767 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Shewana3_2766 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Shewana3_2765 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Shewana3_2771	ivdA	3-ketoacyl-CoA thiolase
	Shewana3_2770	ivdB	methylmalonate-semialdehyde dehydrogenase
	Shewana3_2769	ivdC	branched-chain acyl-CoA dehydrogenase
	Shewana3_2768	ivdD	enoyl-CoA hydratase
	Shewana3_2767	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Shewana3_2766	ivdF	3-hydroxyisobutyrate dehydrogenase
	Shewana3_2765	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -137 Score: 5.7 Sequence: TTTTACGTTTGCGTAAAC Locus tag: Shewana3_2779 Name: tyrR Funciton: aromatic amino acid biosynthesis/transport transciptional regulator
	Shewana3_2779	tyrR	aromatic amino acid biosynthesis/transport transciptional regulator
Position: -98 Score: 5.7 Sequence: GTTGACGTTAACGTTAAC Locus tag: Shewana3_1405 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Shewana3_1406 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Shewana3_1405	etfB	electron transfer flavoprotein, beta subunit
	Shewana3_1406	etfA	electron transfer flavoprotein, alpha subunit
Position: -90 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Shewana3_2131 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Shewana3_2130 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Shewana3_2129 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Shewana3_2131	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Shewana3_2130	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Shewana3_2129	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella sp ANA-3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --