Regulon of LiuR in Shewanella baltica OS155

Properties
Regulator type:	Transcription factor
TF locus tag:	Sbal_2827
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	28
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -189 Score: 6.2 Sequence: GTTGACGTTAACGTAAAG Locus tag: Sbal_1178 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Sbal_1177 Name: gltD Funciton: glutamate synthase, small subunit
	Sbal_1178	gltB	glutamate synthase, large subunit
	Sbal_1177	gltD	glutamate synthase, small subunit
Position: -90 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Sbal_2222 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Sbal_2221 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Sbal_2220 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Sbal_2222	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Sbal_2221	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Sbal_2220	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
Position: -151 Score: 6 Sequence: GCTTACGTTTACGTAAAG Locus tag: Sbal_2483 Name: ldh Funciton: leucine dehydrogenase
	Sbal_2483	ldh	leucine dehydrogenase
Position: -532 Score: 5.7 Sequence: GTTTACGTAAACGTCAAA Locus tag: Sbal_1316 Name: aceB Funciton: malate synthase A Locus tag: Sbal_1317 Name: null Funciton: isocitrate lyase
	Sbal_1316	aceB	malate synthase A
	Sbal_1317		isocitrate lyase
Position: -373 Score: 5.8 Sequence: GATTACGTTAACGTCAAC Locus tag: Sbal_1227 Name: thrA Funciton: aspartate kinase Locus tag: Sbal_1228 Name: thrB Funciton: homoserine kinase Locus tag: Sbal_1229 Name: thrC Funciton: threonine synthase
	Sbal_1227	thrA	aspartate kinase
	Sbal_1228	thrB	homoserine kinase
	Sbal_1229	thrC	threonine synthase
Position: -59 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Sbal_2827 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Sbal_2828 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Sbal_2829 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Sbal_2830 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Sbal_2831 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Sbal_2832 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Sbal_2833 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Sbal_2834 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Sbal_2827	liuR	branched chain amino acid metabolism regulator, MerR family
	Sbal_2828	liuA	isovaleryl-CoA dehydrogenase
	Sbal_2829	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Sbal_2830	liuC	methylglutaconyl-CoA hydratase
	Sbal_2831	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Sbal_2832	liuE	hydroxymethylglutaryl-CoA lyase
	Sbal_2833	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Sbal_2834	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -100 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Sbal_1495 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Sbal_1496 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Sbal_1497 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Sbal_1498 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Sbal_1499 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Sbal_1500 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Sbal_1501 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Sbal_1495	ivdA	3-ketoacyl-CoA thiolase
	Sbal_1496	ivdB	methylmalonate-semialdehyde dehydrogenase
	Sbal_1497	ivdC	branched-chain acyl-CoA dehydrogenase
	Sbal_1498	ivdD	enoyl-CoA hydratase
	Sbal_1499	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Sbal_1500	ivdF	3-hydroxyisobutyrate dehydrogenase
	Sbal_1501	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -98 Score: 5.7 Sequence: GTTGACGTTAACGTTAAC Locus tag: Sbal_2847 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sbal_2846 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sbal_2847	etfB	electron transfer flavoprotein, beta subunit
	Sbal_2846	etfA	electron transfer flavoprotein, alpha subunit

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella baltica OS155

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --