Regulon of LiuR in Shewanella sp W3-18-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputw3181_2305
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Shewanellaceae
Statistics of regulated genes:
- Genes	29
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 134 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - LiuR
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -187 Score: 5.9 Sequence: GTTGACGTTAACGTAATG Locus tag: Sputw3181_3028 Name: gltB Funciton: glutamate synthase, large subunit Locus tag: Sputw3181_3029 Name: gltD Funciton: glutamate synthase, small subunit
	Sputw3181_3028	gltB	glutamate synthase, large subunit
	Sputw3181_3029	gltD	glutamate synthase, small subunit
Position: -172 Score: 6 Sequence: GCTTACGTTTACGTAAAG Locus tag: Sputw3181_1771 Name: ldh Funciton: leucine dehydrogenase
	Sputw3181_1771	ldh	leucine dehydrogenase
Position: -455 Score: 6 Sequence: GTTTACGTAAACGTAAAA Locus tag: Sputw3181_2866 Name: aceB Funciton: malate synthase A Locus tag: Sputw3181_2865 Name: null Funciton: isocitrate lyase
	Sputw3181_2866	aceB	malate synthase A
	Sputw3181_2865		isocitrate lyase
Position: -373 Score: 5.8 Sequence: CGTTACGTTAACGTCAAC Locus tag: Sputw3181_1277 Name: thrA Funciton: aspartate kinase Locus tag: Sputw3181_1278 Name: thrB Funciton: homoserine kinase Locus tag: Sputw3181_1279 Name: thrC Funciton: threonine synthase
	Sputw3181_1277	thrA	aspartate kinase
	Sputw3181_1278	thrB	homoserine kinase
	Sputw3181_1279	thrC	threonine synthase
Position: -59 Score: 6 Sequence: CTTTACCTTTACGTAAAC Locus tag: Sputw3181_2305 Name: liuR Funciton: branched chain amino acid metabolism regulator, MerR family Locus tag: Sputw3181_2306 Name: liuA Funciton: isovaleryl-CoA dehydrogenase Locus tag: Sputw3181_2307 Name: liuB Funciton: 3-methylcrotonyl CoA carboxylase, beta subunit Locus tag: Sputw3181_2308 Name: liuC Funciton: methylglutaconyl-CoA hydratase Locus tag: Sputw3181_2309 Name: liuD Funciton: methylcrotonyl-CoA carboxylase, biotin-containing subunit Locus tag: Sputw3181_2310 Name: liuE Funciton: hydroxymethylglutaryl-CoA lyase Locus tag: Sputw3181_2311 Name: liuF Funciton: acetyl-CoA:acetoacetate-CoA transferase, beta subunit Locus tag: Sputw3181_2312 Name: liuG Funciton: acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
	Sputw3181_2305	liuR	branched chain amino acid metabolism regulator, MerR family
	Sputw3181_2306	liuA	isovaleryl-CoA dehydrogenase
	Sputw3181_2307	liuB	3-methylcrotonyl CoA carboxylase, beta subunit
	Sputw3181_2308	liuC	methylglutaconyl-CoA hydratase
	Sputw3181_2309	liuD	methylcrotonyl-CoA carboxylase, biotin-containing subunit
	Sputw3181_2310	liuE	hydroxymethylglutaryl-CoA lyase
	Sputw3181_2311	liuF	acetyl-CoA:acetoacetate-CoA transferase, beta subunit
	Sputw3181_2312	liuG	acetyl-CoA:acetoacetate-CoA transferase, alpha subunit
Position: -104 Score: 5.9 Sequence: CTTTACGTTCGCGTAAAC Locus tag: Sputw3181_2704 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase Locus tag: Sputw3181_2703 Name: ivdB Funciton: methylmalonate-semialdehyde dehydrogenase Locus tag: Sputw3181_2702 Name: ivdC Funciton: branched-chain acyl-CoA dehydrogenase Locus tag: Sputw3181_2701 Name: ivdD Funciton: enoyl-CoA hydratase Locus tag: Sputw3181_2700 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase Locus tag: Sputw3181_2699 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase Locus tag: Sputw3181_2698 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Sputw3181_2704	ivdA	3-ketoacyl-CoA thiolase
	Sputw3181_2703	ivdB	methylmalonate-semialdehyde dehydrogenase
	Sputw3181_2702	ivdC	branched-chain acyl-CoA dehydrogenase
	Sputw3181_2701	ivdD	enoyl-CoA hydratase
	Sputw3181_2700	ivdE	3-hydroxyisobutyryl-CoA hydrolase
	Sputw3181_2699	ivdF	3-hydroxyisobutyrate dehydrogenase
	Sputw3181_2698	ivdG	3-hydroxyacyl-CoA dehydrogenase
Position: -121 Score: 6 Sequence: GTTTACGTTTGCGTAAAG Locus tag: Sputw3181_2713 Name: tyrR Funciton: aromatic amino acid biosynthesis/transport transciptional regulator
	Sputw3181_2713	tyrR	aromatic amino acid biosynthesis/transport transciptional regulator
Position: -98 Score: 5.2 Sequence: ATTGACGTTAACGTTAAC Locus tag: Sputw3181_1497 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sputw3181_1498 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sputw3181_1497	etfB	electron transfer flavoprotein, beta subunit
	Sputw3181_1498	etfA	electron transfer flavoprotein, alpha subunit
Position: -90 Score: 6.2 Sequence: GTTTACGTTAACGTAATG Locus tag: Sputw3181_2123 Name: bkdA1 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit Locus tag: Sputw3181_2122 Name: bkdA2 Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni Locus tag: Sputw3181_2121 Name: bkdB Funciton: 3-methyl-2-oxobutanoate dehydrogenase complex, E2 component
	Sputw3181_2123	bkdA1	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
	Sputw3181_2122	bkdA2	3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, beta subuni
	Sputw3181_2121	bkdB	3-methyl-2-oxobutanoate dehydrogenase complex, E2 component

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Shewanella sp W3-18-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --