Regulon of Cobalamin in Shewanella sediminis HAW-EB3
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Shewanellaceae |
| Under regulation: | |
| - Genes | 36 |
| - Operons | 5 |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -277
Score: 90 Sequence: TTTTACTCTTTGAAA...
Locus tag: Ssed_2092
Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: Ssed_2093
Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: Ssed_2094
Name: Ssed_2094 Funciton: Additional component of cobalt ECF transporter
Locus tag: Ssed_2095
Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: Ssed_2096
Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter |
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cbiN
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Additional substrate-specific component CbiN of cobalt ECF transporter
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cbiM
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Substrate-specific component CbiM of cobalt ECF transporter
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Ssed_2094
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Additional component of cobalt ECF transporter
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cbiQ
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Transmembrane component CbiQ of energizing module of cobalt ECF transporter
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cbiO
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ATPase component CbiO of energizing module of cobalt ECF transporter
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Position: -334
Score: 112.2 Sequence: AATTTTAACATTATC...
Locus tag: Ssed_2080
Name: cbiD Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: Ssed_2081
Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Ssed_2082
Name: cbiET Funciton: CoCobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: Ssed_2083
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Ssed_2084
Name: cbiG Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: Ssed_2085
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: Ssed_2086
Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: Ssed_2087
Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: Ssed_2088
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Ssed_2089
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Ssed_2090
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
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cbiD
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Cobalt-precorrin-6 synthase, anaerobic
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cbiC
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Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
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cbiET
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CoCobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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cbiG
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Cobalamin biosynthesis protein CbiG
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cbiK
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
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cbiH
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Cobalt-precorrin-3b C17-methyltransferase
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cbiF
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Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
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cysG
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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cbiB
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Adenosylcobinamide-phosphate synthase
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cobD
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L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
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Position: -339
Score: 96.5 Sequence: ATATTCGCATCGACT...
Locus tag: Ssed_2165
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Ssed_2164
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Ssed_2163
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Ssed_2162
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Ssed_2161
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Ssed_2160
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Ssed_2159
Name: cobC Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Locus tag: Ssed_2158
Name: cobT2 Funciton: Predicted nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Ssed_2157
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Ssed_2156
Name: cbiA Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: Ssed_2155
Name: cobS Funciton: Cobalamin synthase
Locus tag: Ssed_2154
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cobC
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Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
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cobT2
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Predicted nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cbiP
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Cobyric acid synthase
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cbiA
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Cobyrinic acid A,C-diamide synthase
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cobS
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Cobalamin synthase
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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Position: -361
Score: 59 Sequence: TATGCTGTCAATCTT...
Locus tag: Ssed_3559
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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Position: -534
Score: 59.1 Sequence: GGAGAGGATCGCAAA...
Locus tag: Ssed_3736
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Ssed_3735
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Ssed_3734
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: Ssed_3733
Name: cobS Funciton: Cobalamin synthase
Locus tag: Ssed_3732
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Ssed_3731
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: Ssed_3730
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobS
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Cobalamin synthase
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cbiP
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Cobyric acid synthase
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |