Regulog Cobalamin - Shewanellaceae

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	8	2
Shewanella putrefaciens CN-32	8	2
Shewanella sp W3-18-1	8	2
Shewanella sp ANA-3	10	2
Shewanella sp MR-4	10	2
Shewanella sp MR-7	10	2
Shewanella baltica OS155	8	2
Shewanella denitrificans OS217	1	1
Shewanella frigidimarina NCIMB 400	8	2
Shewanella amazonensis SB2B	8	2
Shewanella loihica PV-4	8	2
Shewanella pealeana ATCC 700345	8	2
Shewanella halifaxensis HAW-EB4	9	2
Shewanella piezotolerans WP3	8	2
Shewanella sediminis HAW-EB3	36	5
Shewanella woodyi ATCC 51908	8	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
cbiD	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	* Shewanella sediminis HAW-EB3 Site: position = -334 score = 112.16 sequence = AATTTTAACATTATC... Gene: Ssed_2080: Cobalt-precorrin-6 synthase, anaerobic	Shewanella woodyi ATCC 51908	Cobalt-precorrin-6 synthase, anaerobic
cbiC	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2081: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	Shewanella woodyi ATCC 51908	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
cbiET	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2082: CoCobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	Shewanella woodyi ATCC 51908	CoCobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
cbiL	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2083: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	Shewanella woodyi ATCC 51908	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
cbiG	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2084: Cobalamin biosynthesis protein CbiG	Shewanella woodyi ATCC 51908	Cobalamin biosynthesis protein CbiG
cbiK	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2085: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Shewanella woodyi ATCC 51908	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
cbiH	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2086: Cobalt-precorrin-3b C17-methyltransferase	Shewanella woodyi ATCC 51908	Cobalt-precorrin-3b C17-methyltransferase
cbiF	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2087: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	Shewanella woodyi ATCC 51908	Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
cysG	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2088: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)	Shewanella woodyi ATCC 51908	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
cbiB	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2089: Adenosylcobinamide-phosphate synthase	Shewanella woodyi ATCC 51908	Adenosylcobinamide-phosphate synthase
cobD	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2090: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	Shewanella woodyi ATCC 51908	L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)

CRON 2.
cbiN	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	* Shewanella sediminis HAW-EB3 Site: position = -277 score = 90.02 sequence = TTTTACTCTTTGAAA... Gene: Ssed_2092: Additional substrate-specific component CbiN of cobalt ECF transporter	Shewanella woodyi ATCC 51908	Additional substrate-specific component CbiN of cobalt ECF transporter
cbiM	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2093: Substrate-specific component CbiM of cobalt ECF transporter	Shewanella woodyi ATCC 51908	Substrate-specific component CbiM of cobalt ECF transporter
Ssed_2094	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2094: Additional component of cobalt ECF transporter	Shewanella woodyi ATCC 51908	Additional component of cobalt ECF transporter
cbiQ	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2095: Transmembrane component CbiQ of energizing module of cobalt ECF transporter	Shewanella woodyi ATCC 51908	Transmembrane component CbiQ of energizing module of cobalt ECF transporter
cbiO	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2096: ATPase component CbiO of energizing module of cobalt ECF transporter	Shewanella woodyi ATCC 51908	ATPase component CbiO of energizing module of cobalt ECF transporter

CRON 3.
btuB	* Shewanella oneidensis MR-1 Site: position = -338 score = 74.39 sequence = TTGAGTCAACCTTCT... Gene: SO_0815: Outer membrane vitamin B12 receptor BtuB	* Shewanella putrefaciens CN-32 Site: position = -343 score = 73.17 sequence = TTTTTAGTCAACCTT... Gene: Sputcn32_3176: Outer membrane vitamin B12 receptor BtuB	* Shewanella sp W3-18-1 Site: position = -341 score = 73.17 sequence = TTTAGTCAACCTTCT... Gene: Sputw3181_0767: Outer membrane vitamin B12 receptor BtuB	* Shewanella sp ANA-3 Site: position = -339 score = 74.65 sequence = TTTTTAGTCAACCTT... Gene: Shewana3_3472: Outer membrane vitamin B12 receptor BtuB	* Shewanella sp MR-4 Site: position = -341 score = 74.66 sequence = TTTTTAGTCAACCTT... Gene: Shewmr4_3302: Outer membrane vitamin B12 receptor BtuB	* Shewanella sp MR-7 Site: position = -342 score = 74.16 sequence = TTTAGTCAACCTTCT... Gene: Shewmr7_0651: Outer membrane vitamin B12 receptor BtuB	* Shewanella baltica OS155 Site: position = -342 score = 73.63 sequence = TTTAGTCAACCTTCT... Gene: Sbal_0663: Outer membrane vitamin B12 receptor BtuB	* Shewanella denitrificans OS217 Site: position = -268 score = 73.0 sequence = TCTAGTCAACCTTTC... Gene: Sden_0729: Outer membrane vitamin B12 receptor BtuB	* Shewanella frigidimarina NCIMB 400 Site: position = -354 score = 72.36 sequence = TAATAGTCAATCTTT... Gene: Sfri_0824: Outer membrane vitamin B12 receptor BtuB	* Shewanella amazonensis SB2B Site: position = -221 score = 91.17 sequence = CTTTATTGTCAGCCT... Gene: Sama_2631: Outer membrane vitamin B12 receptor BtuB	* Shewanella loihica PV-4 Site: position = -316 score = 72.21 sequence = AATTTAGTCAACCTT... Gene: Shew_2990: Outer membrane vitamin B12 receptor BtuB	* Shewanella pealeana ATCC 700345 Site: position = -346 score = 68.75 sequence = TATTTTAGTCAACTT... Gene: Spea_3206: Outer membrane vitamin B12 receptor BtuB	* Shewanella halifaxensis HAW-EB4 Site: position = -336 score = 76.8 sequence = TATTTTAGTCAACTT... Gene: Shal_3286: Outer membrane vitamin B12 receptor BtuB	* Shewanella piezotolerans WP3 Site: position = -321 score = 73.76 sequence = CTAACTAGTCAACTT... Gene: swp_3945: Outer membrane vitamin B12 receptor BtuB	2 Shewanella sediminis HAW-EB3* Site: position = -361 score = 59.01 sequence = TATGCTGTCAATCTT... Gene: Ssed_3559: Outer membrane vitamin B12 receptor BtuB Site: position = -339 score = 96.5 sequence = ATATTCGCATCGACT... Gene: Ssed_2165: Outer membrane vitamin B12 receptor BtuB	* Shewanella woodyi ATCC 51908 Site: position = -331 score = 57.39 sequence = CCTAAGGCTTTATTA... Gene: Swoo_3735: Outer membrane vitamin B12 receptor BtuB	Outer membrane vitamin B12 receptor BtuB
btuD	* Shewanella oneidensis MR-1 Site: position = -475 score = 57.83 sequence = TAAATGTCGCAGAAA... Gene: SO_1033: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella putrefaciens CN-32 Site: position = -355 score = 59.91 sequence = CCATAACGTCGCAGA... Gene: Sputcn32_2963: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella sp W3-18-1 Site: position = -339 score = 60.72 sequence = ATAACGTCGCAGAAA... Gene: Sputw3181_0984: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella sp ANA-3 Site: position = -348 score = 58.5 sequence = CTCAAAGGTCGCAGA... Gene: Shewana3_3280: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella sp MR-4 Site: position = -345 score = 59.44 sequence = CAAAGGTCGCAGAAA... Gene: Shewmr4_0840: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella sp MR-7 Site: position = -347 score = 59.31 sequence = CTCAAAGGTCGCAGA... Gene: Shewmr7_3182: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella baltica OS155 Site: position = -266 score = 53.55 sequence = TGCCGAGGCACACTG... Gene: Sbal_3366: Vitamin B12 ABC transporter, ATPase component BtuD	Shewanella denitrificans OS217 Gene: Sden_1116: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella frigidimarina NCIMB 400 Site: position = -211 score = 43.37 sequence = ATCTGCGTCGTAACC... Gene: Sfri_0874: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella amazonensis SB2B Site: position = -250 score = 61.05 sequence = CGGTCATTCACGCCA... Gene: Sama_0760: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella loihica PV-4 Site: position = -281 score = 52.35 sequence = GCCTGCGCCGGGAGT... Gene: Shew_0712: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella pealeana ATCC 700345 Site: position = -272 score = 45.22 sequence = AGCTTATAATAAAAA... Gene: Spea_3382: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella halifaxensis HAW-EB4 Site: position = -283 score = 42.95 sequence = TAAATAAGAATGAAA... Gene: Shal_3460: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella piezotolerans WP3 Site: position = -204 score = 42.75 sequence = AAACTAAATTTGAGT... Gene: swp_0994: Vitamin B12 ABC transporter, ATPase component BtuD	2 Shewanella sediminis HAW-EB3* Site: position = -534 score = 59.1 sequence = GGAGAGGATCGCAAA... Gene: Ssed_3736: Vitamin B12 ABC transporter, ATPase component BtuD Gene: Ssed_2164: Vitamin B12 ABC transporter, ATPase component BtuD	* Shewanella woodyi ATCC 51908 Site: position = -401 score = 44.14 sequence = AGGCAGATCCGCAAA... Gene: Swoo_4086: Vitamin B12 ABC transporter, ATPase component BtuD	Vitamin B12 ABC transporter, ATPase component BtuD
btuC	Shewanella oneidensis MR-1 Gene: SO_1034: Vitamin B12 ABC transporter, permease component BtuC	Shewanella putrefaciens CN-32 Gene: Sputcn32_2962: Vitamin B12 ABC transporter, permease component BtuC	Shewanella sp W3-18-1 Gene: Sputw3181_0985: Vitamin B12 ABC transporter, permease component BtuC	Shewanella sp ANA-3 Gene: Shewana3_3279: Vitamin B12 ABC transporter, permease component BtuC	Shewanella sp MR-4 Gene: Shewmr4_0841: Vitamin B12 ABC transporter, permease component BtuC	Shewanella sp MR-7 Gene: Shewmr7_3181: Vitamin B12 ABC transporter, permease component BtuC	Shewanella baltica OS155 Gene: Sbal_3365: Vitamin B12 ABC transporter, permease component BtuC	Shewanella denitrificans OS217 Gene: Sden_1117: Vitamin B12 ABC transporter, permease component BtuC	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0875: Vitamin B12 ABC transporter, permease component BtuC	Shewanella amazonensis SB2B Gene: Sama_0761: Vitamin B12 ABC transporter, permease component BtuC	Shewanella loihica PV-4 Gene: Shew_0713: Vitamin B12 ABC transporter, permease component BtuC	Shewanella pealeana ATCC 700345 Gene: Spea_3381: Vitamin B12 ABC transporter, permease component BtuC	Shewanella halifaxensis HAW-EB4 Gene: Shal_3459: Vitamin B12 ABC transporter, permease component BtuC	Shewanella piezotolerans WP3 Gene: swp_0995: Vitamin B12 ABC transporter, permease component BtuC	2 Shewanella sediminis HAW-EB3 Gene: Ssed_3735: Vitamin B12 ABC transporter, permease component BtuC Gene: Ssed_2163: Vitamin B12 ABC transporter, permease component BtuC	Shewanella woodyi ATCC 51908 Gene: Swoo_4085: Vitamin B12 ABC transporter, permease component BtuC	Vitamin B12 ABC transporter, permease component BtuC
cobU	Shewanella oneidensis MR-1 Gene: SO_1037: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2959: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella sp W3-18-1 Gene: Sputw3181_0988: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella sp ANA-3 Gene: Shewana3_3276: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella sp MR-4 Gene: Shewmr4_0844: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella sp MR-7 Gene: Shewmr7_3178: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella baltica OS155 Gene: Sbal_3362: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0878: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella amazonensis SB2B Gene: Sama_0764: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella loihica PV-4 Gene: Shew_0716: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella pealeana ATCC 700345 Gene: Spea_3378: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella halifaxensis HAW-EB4 Gene: Shal_3455: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella piezotolerans WP3 Gene: swp_0998: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	3 Shewanella sediminis HAW-EB3 Gene: Ssed_3732: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Gene: Ssed_2162: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Gene: Ssed_2160: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Shewanella woodyi ATCC 51908 Gene: Swoo_4082: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
btuF	Shewanella oneidensis MR-1 Gene: SO_3709: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella putrefaciens CN-32 Gene: Sputcn32_2947: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella sp W3-18-1 Gene: Sputw3181_0995: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella sp ANA-3 Gene: Shewana3_3272: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella sp MR-4 Gene: Shewmr4_0848: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella sp MR-7 Gene: Shewmr7_3174: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella baltica OS155 Gene: Sbal_3358: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella denitrificans OS217 Gene: Sden_2853: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0895: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella amazonensis SB2B Gene: Sama_2869: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella loihica PV-4 Gene: Shew_0719: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella pealeana ATCC 700345 Gene: Spea_3374: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella halifaxensis HAW-EB4 Gene: Shal_3452: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella piezotolerans WP3 Gene: swp_1026: Vitamin B12 ABC transporter, B12-binding component BtuF	2 Shewanella sediminis HAW-EB3 Gene: Ssed_3729: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: Ssed_2161: Vitamin B12 ABC transporter, B12-binding component BtuF	Shewanella woodyi ATCC 51908 Gene: Swoo_4079: Vitamin B12 ABC transporter, B12-binding component BtuF	Vitamin B12 ABC transporter, B12-binding component BtuF
cobC	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2159: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)	Shewanella woodyi ATCC 51908	Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
cobT2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2158: Predicted nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella woodyi ATCC 51908	Predicted nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
cbiP	Shewanella oneidensis MR-1 Gene: SO_1038: Cobyric acid synthase	Shewanella putrefaciens CN-32 Gene: Sputcn32_2958: Cobyric acid synthase	Shewanella sp W3-18-1 Gene: Sputw3181_0989: Cobyric acid synthase	Shewanella sp ANA-3 Gene: Shewana3_3275: Cobyric acid synthase	Shewanella sp MR-4 Gene: Shewmr4_0845: Cobyric acid synthase	Shewanella sp MR-7 Gene: Shewmr7_3177: Cobyric acid synthase	Shewanella baltica OS155 Gene: Sbal_3361: Cobyric acid synthase	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0879: Cobyric acid synthase	Shewanella amazonensis SB2B Gene: Sama_0765: Cobyric acid synthase	Shewanella loihica PV-4 Gene: Shew_0717: Cobyric acid synthase	Shewanella pealeana ATCC 700345 Gene: Spea_3377: Cobyric acid synthase	Shewanella halifaxensis HAW-EB4 Gene: Shal_3454: Cobyric acid synthase	Shewanella piezotolerans WP3 Gene: swp_0999: Cobyric acid synthase	2 Shewanella sediminis HAW-EB3 Gene: Ssed_3731: Cobyric acid synthase Gene: Ssed_2157: Cobyric acid synthase	Shewanella woodyi ATCC 51908 Gene: Swoo_4081: Cobyric acid synthase	Cobyric acid synthase
cbiA	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3 Gene: Ssed_2156: Cobyrinic acid A,C-diamide synthase	Shewanella woodyi ATCC 51908	Cobyrinic acid A,C-diamide synthase
cobS	Shewanella oneidensis MR-1 Gene: SO_1036: Cobalamin synthase	Shewanella putrefaciens CN-32 Gene: Sputcn32_2960: Cobalamin synthase	Shewanella sp W3-18-1 Gene: Sputw3181_0987: Cobalamin synthase	Shewanella sp ANA-3 Gene: Shewana3_3277: Cobalamin synthase	Shewanella sp MR-4 Gene: Shewmr4_0843: Cobalamin synthase	Shewanella sp MR-7 Gene: Shewmr7_3179: Cobalamin synthase	Shewanella baltica OS155 Gene: Sbal_3363: Cobalamin synthase	Shewanella denitrificans OS217 Gene: Sden_1118: Cobalamin synthase	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0877: Cobalamin synthase	Shewanella amazonensis SB2B Gene: Sama_0763: Cobalamin synthase	Shewanella loihica PV-4 Gene: Shew_0715: Cobalamin synthase	Shewanella pealeana ATCC 700345 Gene: Spea_3379: Cobalamin synthase	Shewanella halifaxensis HAW-EB4 Gene: Shal_3456: Cobalamin synthase	Shewanella piezotolerans WP3 Gene: swp_0997: Cobalamin synthase	2 Shewanella sediminis HAW-EB3 Gene: Ssed_3733: Cobalamin synthase Gene: Ssed_2155: Cobalamin synthase	Shewanella woodyi ATCC 51908 Gene: Swoo_4083: Cobalamin synthase	Cobalamin synthase
btuR	Shewanella oneidensis MR-1 Gene: SO_1039: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2957: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella sp W3-18-1 Gene: Sputw3181_0990: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella sp ANA-3 Gene: Shewana3_3274: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella sp MR-4 Gene: Shewmr4_0846: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella sp MR-7 Gene: Shewmr7_3176: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella baltica OS155 Gene: Sbal_3360: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella denitrificans OS217 Gene: Sden_1119: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0880: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella amazonensis SB2B Gene: Sama_0766: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella loihica PV-4 Gene: Shew_0718: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella pealeana ATCC 700345 Gene: Spea_3376: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella halifaxensis HAW-EB4 Gene: Shal_3453: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella piezotolerans WP3 Gene: swp_1000: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	2 Shewanella sediminis HAW-EB3 Gene: Ssed_3730: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Gene: Ssed_2154: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Shewanella woodyi ATCC 51908 Gene: Swoo_4080: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
cobT	Shewanella oneidensis MR-1 Gene: SO_1035: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella putrefaciens CN-32 Gene: Sputcn32_2961: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella sp W3-18-1 Gene: Sputw3181_0986: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella sp ANA-3 Gene: Shewana3_3278: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella sp MR-4 Gene: Shewmr4_0842: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella sp MR-7 Gene: Shewmr7_3180: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella baltica OS155 Gene: Sbal_3364: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0876: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella amazonensis SB2B Gene: Sama_0762: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella loihica PV-4 Gene: Shew_0714: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella pealeana ATCC 700345 Gene: Spea_3380: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella halifaxensis HAW-EB4 Gene: Shal_3458: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella piezotolerans WP3 Gene: swp_0996: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella sediminis HAW-EB3 Gene: Ssed_3734: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Shewanella woodyi ATCC 51908 Gene: Swoo_4084: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
SO3711	Shewanella oneidensis MR-1 Gene: SO_3711: Hypothetical protein	Shewanella putrefaciens CN-32 Gene: Sputcn32_2948: Hypothetical protein	Shewanella sp W3-18-1 Gene: Sputw3181_0994: Hypothetical protein	Shewanella sp ANA-3 Gene: Shewana3_3273: Hypothetical protein	Shewanella sp MR-4 Gene: Shewmr4_0847: Hypothetical protein	Shewanella sp MR-7 Gene: Shewmr7_3175: Hypothetical protein	Shewanella baltica OS155 Gene: Sbal_3359: Hypothetical protein	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0894: Hypothetical protein	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Hypothetical protein
Shal_3457	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4 Gene: Shal_3457: hypothetical protein	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Cobalamin - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --