Regulon of Cobalamin in Shewanella oneidensis MR-1
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Shewanellaceae |
| Under regulation: | |
| - Genes | 8 |
| - Operons | 2 |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -338
Score: 74.4 Sequence: TTGAGTCAACCTTCT...
Locus tag: SO_0815
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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Position: -475
Score: 57.8 Sequence: TAAATGTCGCAGAAA...
Locus tag: SO_1033
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: SO_1034
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: SO_1035
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: SO_1036
Name: cobS Funciton: Cobalamin synthase
Locus tag: SO_1037
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: SO_1038
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: SO_1039
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobS
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Cobalamin synthase
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cbiP
|
Cobyric acid synthase
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btuR
|
Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |